YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258374, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258374, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975232, gi\|... - gi\|52141763\|ref\|YP_085067.1\| formate transporter [Bacillus cereus E33L], gi\|51975232\|gb\|AAU16782.1\| ... gi\|229092761, gi... - gi\|229092761\|ref\|ZP_04223899.1\| Uncharacterized transporter [Bacillus cereus Rock3-42], gi\|228690559...	3.0E-77	[1..271]	[1..271]
gi\|42782805, gi\|... - gi\|42782805\|ref\|NP_980052.1\| formate transporter, putative [Bacillus cereus ATCC 10987], gi\|42738732...	5.0E-77	[1..271]	[1..271]
gi\|49329901, gi\|... - gi\|49478345\|ref\|YP_037792.1\| formate transporter [Bacillus thuringiensis serovar konkukian str. 97-2...	7.0E-77	[1..271]	[1..271]
gi\|47569252, gi\|... - gi\|47569252\|ref\|ZP_00239938.1\| formate/nitrite transporter family protein [Bacillus cereus G9241], g...	1.0E-76	[1..271]	[1..271]
gi\|89152749, gi\|... - gi\|89209321\|ref\|ZP_01187757.1\| Formate/nitrite transporter [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|228614868, gi... - gi\|229168462\|ref\|ZP_04296185.1\| Uncharacterized transporter [Bacillus cereus AH621], gi\|228614868\|gb...	3.0E-76	[1..271]	[1..271]
gi\|133727747, gi... - gi\|153166231\|ref\|ZP_01926850.1\| hypothetical protein LMHG_00097 [Listeria monocytogenes FSL N1-017],... gi\|254852407 - gi\|254852407\|ref\|ZP_05241755.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|254823817 - gi\|254823817\|ref\|ZP_05228818.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|153201615, gi... - gi\|254931297\|ref\|ZP_05264656.1\| formate/nitrite transporter family protein [Listeria monocytogenes H... gi\|46880414, gi\|... - gi\|46907147\|ref\|YP_013536.1\| formate/nitrite transporter family protein [Listeria monocytogenes str.... gi\|254878315 - gi\|254878315\|ref\|ZP_05251025.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	7.0E-76	[1..262]	[1..262]
gi\|47019562, gi\|... - gi\|47092122\|ref\|ZP_00229915.1\| formate/nitrite transporter family protein [Listeria monocytogenes st... gi\|254993893 - gi\|254993893\|ref\|ZP_05276083.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	7.0E-76	[1..262]	[1..262]
gi\|16799984 - gi\|16799984\|ref\|NP_470252.1\| hypothetical protein lin0912 [Listeria innocua Clip11262] gi\|254898914, gi... - gi\|254898914\|ref\|ZP_05258838.1\| hypothetical protein LmonJ_03835 [Listeria monocytogenes J0161], gi\|... gi\|16802953 - gi\|16802953\|ref\|NP_464438.1\| hypothetical protein lmo0912 [Listeria monocytogenes EGD-e] gi\|254832120, gi... - gi\|254832120\|ref\|ZP_05236775.1\| hypothetical protein Lmon1_12269 [Listeria monocytogenes 10403S], gi... gi\|25322509, gi\|... - pir\|\|AH1188 transporters (formate) homolog lmo0912 [imported] - Listeria monocytogenes (strain EGD-e... gi\|127766011, gi... - gi\|254911598\|ref\|ZP_05261610.1\| hypothetical protein LmonJ2_02290 [Listeria monocytogenes J2818], gi... gi\|47016802, gi\|... - gi\|47094920\|ref\|ZP_00232534.1\| formate/nitrite transporter family protein [Listeria monocytogenes st... gi\|254827858, gi... - gi\|254827858\|ref\|ZP_05232545.1\| hypothetical protein LmonocytogeFSL_05300 [Listeria monocytogenes FS... gi\|254935924, gi... - gi\|254935924\|ref\|ZP_05267621.1\| hypothetical protein LmonF6_02295 [Listeria monocytogenes F6900], gi... gi\|25322510, gi\|... - pir\|\|AH1546 transporters (formate) homolog lin0912 [imported] - Listeria innocua (strain Clip11262)... gi\|224503118 - gi\|224503118\|ref\|ZP_03671425.1\| hypothetical protein LmonFR_11458 [Listeria monocytogenes FSL R2-561...	1.0E-75	[1..262]	[1..262]
gi\|74489902, gi\|... - gi\|75762606\|ref\|ZP_00742454.1\| Formate/nitrite transporter family protein [Bacillus thuringiensis se...	3.0E-75	[1..271]	[17..287]
gi\|29897377, gi\|... - gi\|30021821\|ref\|NP_833452.1\| formate transporter [Bacillus cereus ATCC 14579], gi\|29897377\|gb\|AAP106... gi\|229129003, gi... - gi\|229129003\|ref\|ZP_04257976.1\| Uncharacterized transporter [Bacillus cereus BDRD-Cer4], gi\|22865424...	1.0E-74	[1..271]	[1..271]

Back

Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFTPEEIT ELAANSGRKK AHLSLLPMLI LGFFGGAFIA LGYLLDIHVI GTMPKAWGSF  60
   61 TSFLGAAVFP IGLILVILAG GELVTGNMMT VSMAWLHKKI DLFHFIRNLV IVTFSNFIGA 120
  121 VFVAYFFGHI VGLAEGAFLA KTVSVAQAKL QDTPLQAFIS AIGCNWLVCL AVWLSMGSKE 180
  181 FIGKIIGIWF PVMTFVAIGF QHVVANMFVI PAAIFAGHLT WIEYFPNFIF VFFGNLVGGM 240
  241 LFVALPYFIS YKKKLPSKEE QTALKKKSVS A

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.62
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits