YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263727, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263727, gi|....

Description	E-value	Query Range	Subject Range
gi\|74268368 - gi\|74268368\|gb\|AAI02932.1\| Chitinase, acidic [Bos taurus]	3.0E-77	[6..356]	[3..383]
gi\|111494114, gi... - gi\|111494114\|gb\|AAI05682.1\| Chitinase 1 (chitotriosidase) [Homo sapiens], gi\|111494006\|gb\|AAI05681.1...	5.0E-77	[11..359]	[4..384]
gi\|46240808 - gi\|46240808\|dbj\|BAD15061.1\| chitinase3 [Paralichthys olivaceus]	1.0E-76	[10..358]	[4..383]
gi\|109018788 - gi\|109018788\|ref\|XP_001103012.1\| PREDICTED: chitotriosidase isoform 2 [Macaca mulatta]	1.0E-76	[11..359]	[4..384]
gi\|110624800, gi... - gi\|110624800\|ref\|NP_001036067.1\| chitinase 10 [Tribolium castaneum], gi\|109895312\|gb\|ABG47448.1\| chi...	2.0E-76	[19..359]	[2306..2686]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKFKFICC TLVIFLLLPL APFQAQAANN LGSKLLVGYW HNFDNGTGII KLRDVSPKWD  60
   61 VINVSFGETG GDRSTVEFSP VYGTDAEFKS DISYLKSKGK KVVLSIGGQN GVVLLPDNAA 120
  121 KQRFINSIQS LIDKYGFDGI DIDLESGIYL NGNDTNFKNP TTPQIVNLIS AIRTISDHYG 180
  181 PDFLLSMAPE TAYVQGGYSA YRSIWGAYLP IIYGVKDKLT YIHVQHYNAG SGIGMDGNNY 240
  241 NQGTADYEVA MADMLLHGFP IGGNANNMFP ALRSDQVMIG LPATPAAAPS GGYISPTEMK 300
  301 KALDYIIKGI PFGGKYKLSN ESGYPAFRGL MSWSINWDAK NNFEFSSNYR TYFDAIPLQK 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.30103
Match:	1wawA
Description:	Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitinase activity	4.63053093657993	bayes_pls_golite062009
catalytic activity	0.904956784158091	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.78623686340888	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.54690583049799	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
hydrolase activity	0.06868321459924	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009
binding	0.0211752443510049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: