YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49180439, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	562 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49180439, gi|....

Description	E-value	Query Range	Subject Range
gi\|163863545, gi... - gi\|89208679\|ref\|ZP_01187172.1\| Phage Terminase [Bacillus weihenstephanensis KBAB4], gi\|89153379\|gb\|E...	0.0	[1..562]	[1..562]
gi\|164713491, gi... - gi\|165870657\|ref\|ZP_02215310.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus ant... gi\|254762056 - gi\|254762056\|ref\|ZP_05213905.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus ant... gi\|254756237 - gi\|254756237\|ref\|ZP_05208266.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus ant... gi\|30260628, gi\|... - gi\|30260628\|ref\|NP_843005.1\| prophage LambdaBa04, terminase, large subunit, putative [Bacillus anthr... gi\|254738918 - gi\|254738918\|ref\|ZP_05196620.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus ant... gi\|21398415, gi\|... - gi\|65317890\|ref\|ZP_00390849.1\| COG4626: Phage terminase-like protein, large subunit [Bacillus anthra... gi\|254725936, gi... - gi\|254725936\|ref\|ZP_05187718.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus ant... gi\|229602404, gi... - gi\|229602404\|ref\|YP_002865072.1\| putative prophage LambdaBa04, terminase, large subunit [Bacillus an... gi\|49183471, gi\|... - gi\|49183471\|ref\|YP_026723.1\| prophage LambdaBa04, terminase, large subunit, putative [Bacillus anthr... gi\|47500885, gi\|... - gi\|47525737\|ref\|YP_017086.1\| prophage lambdaba04, terminase, large subunit, putative [Bacillus anthr...	0.0	[1..562]	[1..562]
gi\|193064347, gi... - gi\|75257712\|ref\|ZP_00729203.1\| COG4626: Phage terminase-like protein, large subunit [Escherichia col...	0.0	[1..559]	[1..565]
gi\|218547996, gi... - gi\|218547996\|ref\|YP_002381787.1\| putative phage terminase [Escherichia fergusonii ATCC 35469], gi\|21... gi\|91073560, gi\|... - gi\|91211986\|ref\|YP_541972.1\| bacteriophage V large terminase subunit [Escherichia coli UTI89], gi\|91... gi\|218559616, gi... - gi\|218559616\|ref\|YP_002392529.1\| putative phage terminase [Escherichia coli S88], gi\|218366385\|emb\|C... gi\|115513990, gi... - gi\|117624866\|ref\|YP_853779.1\| bacteriophage V large terminase subunit [Escherichia coli APEC O1], gi... gi\|226899798, gi... - gi\|237706758\|ref\|ZP_04537239.1\| bacteriophage V large terminase subunit [Escherichia sp. 3_2_53FAA],...	0.0	[1..559]	[1..565]
gi\|74313212, gi\|... - gi\|74313212\|ref\|YP_311631.1\| hypothetical protein SSON_2779 [Shigella sonnei Ss046], gi\|73856689\|gb\|...	0.0	[1..559]	[1..565]
TERL_BPSF5 - Putative terminase large subunit OS=Shigella phage SfV GN=2 PE=3 SV=1	0.0	[1..558]	[1..564]
gi\|23505447, gi\|... - gi\|23505447\|ref\|NP_700375.1\| Terminase large subunit [Salmonella phage ST64B], gi\|23379194\|gb\|AAL258... lcl\|NC_016856.1_... - [gene=STM14_2452] [protein=terminase large subunit] [protein_id=YP_005237998.1] [location=complement...	0.0	[1..559]	[1..565]
gi\|75227641, gi\|... - gi\|75227641\|ref\|ZP_00714386.1\| COG4626: Phage terminase-like protein, large subunit [Escherichia col...	0.0	[1..559]	[1..564]
gi\|75428736, gi\|... - gi\|75428736\|ref\|ZP_00731865.1\| terminase, large subunit [Actinobacillus succinogenes 130Z], gi\|74277...	0.0	[6..557]	[1..556]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIQYLLSYN PIIEYYSLIE SGKEIVSEKV RRIYKKLVSD IDDKESIYEY DSKKANHAIE  60
   61 FIENFCKHSK GKWGGKPIVL EVWQKAFIAA AFGFVHGIDG TRKYREVLLV VARKNGKSTV 120
  121 GSGIGLYLQI ADGEPGSEVY AVATKKDQAK LVWLESKRMV KKSPALLKRI KPLVSEMVSE 180
  181 WNDSTFKPLG SDSETLDGLN VHGAMMDEIH AWKDKNLYDV IVDGTSSREQ PMIFMITTAG 240
  241 TVRESVYDMK YEEAEMLLNG LDDPDGYKDD RFLPIIYELD KREEWTDPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2o0hA
Description:	No description for 2o0hA was found.

Predicted Domain #2

Region A:
Residues: [290-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWKKANPGLG SIKKIDQLET KVNKAKANSL LVKNLLTKDF NIRETSTEAW LTFEQLNNPE  60
   61 TFDIEKLKPS YGIGGCDLSS TTDLTAAKVI FMVPEDPHIY VKQMYWLPED LLEQRSKEDK 120
  121 IPYNLWHEQG ILRTTPGNSV HYKFVTKWFL EIRDEYGIYL PWIGYDKWSA KYWVEEMEGY 180
  181 F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [471-562]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKESMIPIAQ GKQTLSSPMK LLGADLESKL INYNNHTIDK WCLSNTAIDV DKNLNIQPNK  60
   61 TKNQRRRIDG TAALLNAYVV LQEKRNDYLN MI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.429	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.420	N/A	N/A	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.345	N/A	N/A	g.2.2	Neurotoxin B-IV
View	Download	0.336	N/A	N/A	g.57.1	Serine proteinase inhibitor lekti
View	Download	0.316	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits