YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258298, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258298, gi|....

Description	E-value	Query Range	Subject Range
gi\|50903558, gi\|... - gi\|50914484\|ref\|YP_060456.1\| Phage prohead protease [Streptococcus pyogenes MGAS10394], gi\|50903558\|... gi\|50261617, gi\|... - gi\|50261617\|gb\|AAT72385.1\| phage major capsid protein [Streptococcus pyogenes], gi\|40218572\|gb\|AAR83...	296.0	[0..3]	[384..17]
gi\|125714360, gi... - gi\|67916088\|ref\|ZP_00509810.1\| Phage major capsid protein, HK97 family [Clostridium thermocellum ATC...	292.0	[0..2]	[386..16]
gi\|42779481, gi\|... - gi\|42779481\|ref\|NP_976728.1\| HK97 family phage major capsid protein [Bacillus cereus ATCC 10987], gi...	288.0	[0..3]	[385..17]
gi\|77683955, gi\|... - gi\|77683955\|ref\|ZP_00799395.1\| Phage major capsid protein, HK97 [Alkaliphilus metalliredigenes QYMF]...	283.0	[0..2]	[385..16]
gi\|238833220, gi... - gi\|238854144\|ref\|ZP_04644491.1\| phage major capsid protein, HK97 family [Lactobacillus gasseri 202-4... gi\|23003008 - gi\|23003008\|ref\|ZP_00046678.1\| COG4653: Predicted phage phi-C31 gp36 major capsid-like protein [Lact... gi\|23003008, gi\|... - gi\|23003008\|ref\|ZP_00046678.1\| hypothetical protein Lgas_03001094 [Lactobacillus gasseri ATCC 33323]...	275.0	[0..2]	[385..16]
gi\|242232150, gi... - gi\|242256320\|ref\|ZP_04801213.1\| phage major capsid protein, HK97 family [Thermoanaerobacter sp. X513... gi\|167039899, gi... - gi\|167039899\|ref\|YP_001662884.1\| HK97 family phage major capsid protein [Thermoanaerobacter sp. X514...	274.0	[0..2]	[385..16]
gi\|77411272, gi\|... - gi\|77411272\|ref\|ZP_00787622.1\| phage major capsid protein, HK97 family [Streptococcus agalactiae CJB...	266.0	[0..3]	[384..17]
gi\|76562106, gi\|... - gi\|76787049\|ref\|YP_329375.1\| prophage LambdaSa04, HK97 family major capsid protein [Streptococcus ag...	261.0	[0..3]	[384..17]
gi\|57234159, gi\|... - gi\|57234159\|ref\|YP_181800.1\| HK97 family major capsid protein [Dehalococcoides ethenogenes 195], gi\|...	259.0	[0..2]	[385..16]
gi\|45917228, gi\|... - gi\|69275184\|ref\|ZP_00611096.1\| Phage major capsid protein, HK97 [Mesorhizobium sp. BNC1], gi\|6819362...	248.0	[0..14]	[386..32]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLQEILTR KSEIRSMLQS DKEVDLAALE TELRDLEETQ KQIETRQRLL KEAEEINNNQ  60
   61 MPEIRTVETF NNEPQKQDVE LETSEKRGQA LMENR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVTVGSGNVV LPKHSATDIR PTFNEVSTLI DRVSSKTLKG GESYQQPYIK SYGEGDYTTE  60
   61 GNDYNTSETT FGYADITKAK VTAYSEDTEE LQKLPAADYD AEVMKGITVA TRKKLTREIL 120
  121 IGTGATNRLV GIFSAAATAI DSETDLEISA IDASTLDEII YSYGGDEDVE DAAVLILNKL 180
  181 DLKSFAKLRT SDGKKVYNVV SQGNSGTIDG VPFIINSACK AVSDAKTTAG QYSMAYGPLS 240
  241 NYQLTIFSDM DVQRSTDFKF KQGMIAHRGS VFAGGNVISK NGFLRVKKAA TV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1ohgA
Description:	STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits