YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258268, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258268, gi|....

Description	E-value	Query Range	Subject Range
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	1.0E-94	[2..257]	[4..245]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	3.0E-92	[1..256]	[14..255]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	7.0E-92	[2..257]	[4..247]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	7.0E-92	[2..256]	[24..264]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	2.0E-91	[2..256]	[23..263]
gi\|52784220, gi\|... - gi\|52784220\|ref\|YP_090049.1\| hypothetical protein BLi00398 [Bacillus licheniformis ATCC 14580], gi\|5...	3.0E-91	[2..255]	[4..243]
gi\|7442577 - pir\|\|F72756 probable multiple sugar-binding transport ATP-binding protein APE0043 - Aeropyrum pernix... gi\|14600403, gi\|... - gi\|5103431\|dbj\|BAA78952.1\| 381aa long hypothetical multiple sugar-binding transport ATP-binding prot...	3.0E-91	[2..257]	[17..264]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEFRNVSKV YPNGTKGLNN INLKIQKGEF VVMVGLSGAG KSTLLRSVNR LHEITEGEIM  60
   61 IEGESITAAK GKGLRRMRRD IGMIFQSFNL VKRSTVLKNV LAGRVGYHST LRTTLGLFPK 120
  121 EDLELAFQSL KRVNILEKAY ARADELSGGQ QQRVSIARAL AQEAKIILAD EPVASLDPLT 180
  181 TKQVLEDLKK INEDFGITTI VNLHSIDLAR QYATRIIGLH AGEIVFDGLV EEATDEKFAE 240
  241 IYGDVVQKSE LLEVAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.154902
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits