YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258189, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258189, gi|....

Description	E-value	Query Range	Subject Range
gi\|109497900 - gi\|109497900\|ref\|XP_213878.4\| PREDICTED: similar to chitinase 1 (chitotriosidase) [Rattus norvegicus...	2.0E-69	[107..427]	[30..388]
gi\|91079784 - gi\|91079784\|ref\|XP_967813.1\| PREDICTED: similar to brain chitinase and chia [Tribolium castaneum]	5.0E-69	[108..427]	[15..384]
gi\|47229253 - gi\|47229253\|emb\|CAG04005.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-68	[108..421]	[25..379]
gi\|23092863, gi\|... - gi\|24656434\|ref\|NP_647768.2\| CG1869-PA [Drosophila melanogaster], gi\|23092863\|gb\|AAF47714.2\| CG1869-...	1.0E-68	[103..427]	[122..491]
gi\|61680202, gi\|... - gi\|61680203\|pdb\|1WB0\|A Chain A, Specificity And Affinity Of Natural Product Cyclopentapeptide Inhibi...	2.0E-68	[108..418]	[5..348]
gi\|109018788 - gi\|109018788\|ref\|XP_001103012.1\| PREDICTED: chitotriosidase isoform 2 [Macaca mulatta]	3.0E-68	[98..418]	[16..369]
gi\|114571914 - gi\|114571914\|ref\|XP_514112.2\| PREDICTED: chitotriosidase isoform 6 [Pan troglodytes]	4.0E-68	[98..418]	[16..369]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQIVTVRSG DSVYSLASKY GSTPDEIVKD NGLNPAETLV VGQALIVNTK GNNYYVQPGD  60
   61 SLYRISQTYN VPLASLAKVN NLSLKSILHV GQQLYIPKGT KRAVESIAYL QPSTIPIKES 120
  121 LVNATRAINP FLTYLAYFSF EAKRDGTLKE PTETAKIANI ATQGNTIPML VITNIENGNF 180
  181 SADLTSVILR DATIQNKFIT NILQTAEKYG MRDIHFDFES VAPEDREAYN RFLRNVKTRL 240
  241 PSGYTLSTTL VPKTSSNQKG KFFETHDYKA QGQIVDFVVI MTYDWGWQGG PPMAISPIGP 300
  301 VKEVLQYAKS QMPPQKIMMG QNLYGFDWKL PFKEGNPPAK AISSVAAVAL ARKYNVPIRY 360
  361 DFTAQAPHFN YFDENGVQHE VWFEDSRSVQ SKFNLMKEQG IGGISYWKIG LPFPQNWRLL 420
  421 VENFTITKKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.221849
Match:	1rd6A
Description:	Crystal Structure of S. Marcescens Chitinase A Mutant W167A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits