YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258180, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	654 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258180, gi|....

Description	E-value	Query Range	Subject Range
gi\|42738593, gi\|... - gi\|42782667\|ref\|NP_979914.1\| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987], gi\|4273859... gi\|228643296, gi... - gi\|229140210\|ref\|ZP_04268768.1\| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26], gi\|228643... gi\|217067922, gi... - gi\|217960999\|ref\|YP_002339567.1\| DNA topoisomerase IV, B subunit [Bacillus cereus AH187], gi\|2170679...	0.0	[1..654]	[1..654]
gi\|228690849, gi... - gi\|229092562\|ref\|ZP_04223718.1\| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42], gi\|2286908... gi\|228773017, gi... - gi\|228986686\|ref\|ZP_04146816.1\| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar tochig... gi\|228812459, gi... - gi\|228947212\|ref\|ZP_04109506.1\| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar monter... gi\|228928649, gi... - gi\|228928649\|ref\|ZP_04091685.1\| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pondic... gi\|51975408, gi\|... - gi\|52141939\|ref\|YP_084890.1\| DNA topoisomerase IV subunit B [Bacillus cereus E33L], gi\|51975408\|gb\|A... gi\|229157170, gi... - gi\|229157170\|ref\|ZP_04285250.1\| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342], gi\|228626... gi\|229123114, gi... - gi\|229123114\|ref\|ZP_04252321.1\| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201], gi\|22866040... gi\|218904724, gi... - gi\|218904724\|ref\|YP_002452558.1\| DNA topoisomerase IV, B subunit [Bacillus cereus AH820], gi\|2185357... gi\|49329845, gi\|... - gi\|49478289\|ref\|YP_037677.1\| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar konkukia... gi\|196038513, gi... - gi\|196038513\|ref\|ZP_03105822.1\| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99], gi\|196... gi\|196034146, gi... - gi\|196034146\|ref\|ZP_03101556.1\| DNA topoisomerase IV, B subunit [Bacillus cereus W], gi\|195993220\|gb...	0.0	[1..654]	[1..654]
gi\|47570276, gi\|... - gi\|47570276\|ref\|ZP_00240926.1\| DNA topoisomerase IV, B subunit [Bacillus cereus G9241], gi\|47553067\|...	0.0	[1..654]	[1..654]
gi\|89152939, gi\|... - gi\|89209135\|ref\|ZP_01187593.1\| Gram positive topoisomerase IV, subunit B [Bacillus weihenstephanensi...	0.0	[1..654]	[1..654]
GYRB_BACHD - DNA gyrase subunit B OS=Bacillus halodurans GN=gyrB PE=3 SV=1 gi\|11270951, gi\|... - gi\|2760177\|dbj\|BAA24187.1\| B subunit of DNA gyrase [Bacillus sp.], pir\|\|T46551 DNA topoisomerase (AT... GYRB_BACHD - DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 ...	0.0	[1..640]	[1..637]
gi\|52078497, gi\|... - gi\|52078497\|ref\|YP_077288.1\| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580], gi\|52001708\|g...	0.0	[1..640]	[1..639]
gi\|89149136, gi\|... - gi\|89202825\|ref\|ZP_01181532.1\| Gram positive topoisomerase IV, subunit B [Bacillus cereus subsp. cyt...	0.0	[1..654]	[27..680]
gi\|228654574, gi... - gi\|229128869\|ref\|ZP_04257845.1\| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4], gi\|228654... gi\|229047280, gi... - gi\|229047280\|ref\|ZP_04192879.1\| DNA topoisomerase 4 subunit B [Bacillus cereus AH676], gi\|228724022\|... gi\|29897253, gi\|... - gi\|30021698\|ref\|NP_833329.1\| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579], gi\|2989725... gi\|228799911, gi... - gi\|228959781\|ref\|ZP_04121456.1\| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pakist...	0.0	[1..654]	[1..654]
GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis GN=gyrB PE=3 SV=1 gi\|221312137 - gi\|221312137\|ref\|ZP_03593942.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB 36... GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3 SV=1 gi\|221317070 - gi\|221317070\|ref\|ZP_03598364.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321333 - gi\|221321333\|ref\|ZP_03602627.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[1..640]	[1..638]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHQFQYNE DAIQVLEGLE AVRKRPGMYI GSTDSRGLHH LVYEIVDNSV DEALAGFGDE  60
   61 ISVVIHKDNS ISVIDKGRGM PTGMHKLGKP TPEVILTVLH AGGKFGQGGY KTSGGLHGVG 120
  121 ASVVNALSEW LVVTIKRDGN IYEQRFENGG VPVTTLEKIG KTKESGTTMH FKPDTTIFST 180
  181 TNYNYETLCE RLRESAFLLK GMKISIKDER NDLEDVFHYE TGIEAFVSYL NEEKDSIHPV 240
  241 VYFTGEQNGI EAELAFQFND GYSENILSFV NNVRTKDGGT HEAGFKTAMT RVFNEYARKV 300
  301 ALLKEKDKNL EGTDIREGVA AIVSVRVPEE VLQFEGQTKG KLGTSEARSS IDAIVSEHLA 360
  361 YFLEENPDVA TLLVRKAIKA AQAREAARKA REEARTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	154.0
Match:	1ei1A
Description:	DNA gyrase B
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [398-654]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKKKSEGTL SGKLTPAQSR NPQKNELYLV EGDSAGGSAK QGRDRRFQAV LPLRGKVINT  60
   61 EKAKLADIFK NEEINTIIYA IGGGVGNEFD VEDINYDKVV IMTDADTDGA HIQVLLLTFF 120
  121 YRYMKPLIEA GKVFIALPPL YKVSKGKGKS EVIEYAWSDE ELDSVTKKVG KGYMLQRYKG 180
  181 LGEMNADQLW ETTMNPETRT LIRVKIDDAA RAERRVTTLM GDKVEPRRKW IERNVQFGMQ 240
  241 EEGNILENEM IMETEVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.221849
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits