YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263536, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263536, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478970, gi\|... - gi\|49478970\|ref\|YP_037669.1\| transcriptional regulator LytR, attenuator for lytABC and lytR expressi...	2.0E-99	[1..345]	[1..345]
gi\|42782655, gi\|... - gi\|42782655\|ref\|NP_979902.1\| LytR family transcription antiterminator [Bacillus cereus ATCC 10987], ...	4.0E-97	[1..345]	[1..345]
gi\|65320867, gi\|... - gi\|65320867\|ref\|ZP_00393826.1\| COG1316: Transcriptional regulator [Bacillus anthracis str. A2012], r...	2.0E-96	[1..345]	[1..345]
gi\|51975417, gi\|... - gi\|52141948\|ref\|YP_084881.1\| transcriptional regulator LytR, attenuator for lytABC and lytR expressi...	5.0E-95	[1..345]	[1..345]
gi\|47570265, gi\|... - gi\|47570265\|ref\|ZP_00240915.1\| transcriptional regulator [Bacillus cereus G9241], gi\|47553056\|gb\|EAL...	1.0E-93	[1..345]	[1..345]
gi\|37777822 - gi\|37777822\|gb\|AAR02473.1\| EcfY [Bacillus thuringiensis serovar thuringiensis] gi\|228973590, gi... - gi\|228973590\|ref\|ZP_04134172.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar thur... gi\|228818997, gi... - gi\|228940671\|ref\|ZP_04103235.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar berl... gi\|228779506, gi... - gi\|228980148\|ref\|ZP_04140462.1\| Transcriptional regulator, LytR [Bacillus thuringiensis Bt407], gi\|2...	5.0E-93	[1..345]	[1..345]
gi\|228654564, gi... - gi\|229128859\|ref\|ZP_04257835.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|30021688, gi\|... - gi\|30021688\|ref\|NP_833319.1\| LytR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	7.0E-93	[1..345]	[1..345]
gi\|163941193, gi... - gi\|89208610\|ref\|ZP_01187107.1\| Cell envelope-related transcriptional attenuator [Bacillus weihenstep...	9.0E-92	[1..345]	[1..345]
gi\|74490240, gi\|... - gi\|75762274\|ref\|ZP_00742160.1\| Transcriptional regulator, LytR family [Bacillus thuringiensis serova...	6.0E-91	[1..345]	[1..345]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHSSSRER KYKRKYKKTT IISSLLAVLL FGGVGYGAYV YMKTSNLVQK SNVNLARGEK  60
   61 SNLREET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKPITNNVSL LIMGIDENQE RQKEYNGAFH TDALLLATFN KDDKTVKLTS IPRDTYTYVP  60
   61 VEKKKDKITH AYGSGFVKKG KDGGPQASVE AVEKLLQVPV DYFVKFNFNS FTKIIDGLDG 120
  121 IEVDVPVEFT EQNSKDEPDA IHLKKGLQKL NGEEALALAR TRHIDSDAMR GQRQQLVMEA 180
  181 ILSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.886057
Match:	PF03816.5
Description:	No description for PF03816.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKSVGSITKL EKIVEAVDGD FKTNLAMDDI LSFYKYGLNC SVEKIQLAGD DLYLPNGPNG  60
   61 QRVYYYNPNK KDLQSLSNTL RTHLGLSEKE IEEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.388	d.41.3	Pyrimidine nucleoside phosphorylase C-terminal domain
View	Download	0.376	d.56.1	GroEL-intermediate domain like
View	Download	0.348	a.4.1	Homeodomain-like
View	Download	0.322	c.61.1	PRTase-like
View	Download	0.301	d.56.1	GroEL-intermediate domain like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits