YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49186376, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49186376, gi|....

Description	E-value	Query Range	Subject Range
gi\|229185810, gi... - gi\|229185810\|ref\|ZP_04312984.1\| Spore germination protein [Bacillus cereus BGSC 6E1], gi\|228597647\|g... gi\|228824750, gi... - gi\|228934850\|ref\|ZP_04097681.1\| Spore germination protein [Bacillus thuringiensis serovar andalousie... gi\|49331024, gi\|... - gi\|49479468\|ref\|YP_037656.1\| spore germination protein [Bacillus thuringiensis serovar konkukian str...	2.0E-93	[1..378]	[1..378]
gi\|51975428, gi\|... - gi\|52141959\|ref\|YP_084870.1\| spore germination protein [Bacillus cereus E33L], gi\|51975428\|gb\|AAU169...	4.0E-91	[1..378]	[1..378]
gi\|30021677, gi\|... - gi\|30021677\|ref\|NP_833308.1\| spore germination protein Sc [Bacillus cereus ATCC 14579], gi\|29897232\|... gi\|229146143, gi... - gi\|229146143\|ref\|ZP_04274518.1\| Spore germination protein [Bacillus cereus BDRD-ST24], gi\|228637202\|... gi\|228654552, gi... - gi\|229128847\|ref\|ZP_04257823.1\| Spore germination protein [Bacillus cereus BDRD-Cer4], gi\|228654552\|...	5.0E-91	[1..378]	[1..378]
gi\|42738568, gi\|... - gi\|42782642\|ref\|NP_979889.1\| spore germination protein [Bacillus cereus ATCC 10987], gi\|42738568\|gb\|...	2.0E-89	[1..378]	[1..378]
gi\|89897223, gi\|... - gi\|89897223\|ref\|YP_520710.1\| hypothetical protein DSY4477 [Desulfitobacterium hafniense Y51], gi\|893... gi\|68168096, gi\|... - gi\|68208002\|ref\|ZP_00560141.1\| Spore germination B3 GerAC like, C-terminal [Desulfitobacterium hafni...	2.0E-85	[2..377]	[5..380]
gi\|68208740, gi\|... - gi\|68208740\|ref\|ZP_00560834.1\| Spore germination B3 GerAC like, C-terminal [Desulfitobacterium hafni...	2.0E-81	[18..378]	[22..392]
gi\|163938634, gi... - gi\|89207974\|ref\|ZP_01186500.1\| Spore germination B3 GerAC like, C-terminal [Bacillus weihenstephanen...	4.0E-80	[1..375]	[1..380]
GERLC_BACCE - Spore germination protein GerLC OS=Bacillus cereus GN=gerLC PE=3 SV=1 gi\|14587070\|gb\|A... - spore germination protein GerLC [Bacillus cereus]	1.0E-79	[1..375]	[3..382]
gi\|74490823, gi\|... - gi\|75761692\|ref\|ZP_00741637.1\| Spore germination protein LC [Bacillus thuringiensis serovar israelen...	1.0E-79	[1..375]	[4..383]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFIHFTIL CFLITLLTGC GDRLDLEKQS ISLIYGFDAK AKGKLIVYHV NPIFNEDVEK  60
   61 KYETHEAKVR TPREAKATFN SSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVSTEKLQL ILFSTKFLKQ EGAMPYLDVW YRDPKNTGNM RMVAVDGPIS SVIYNNFKDK  60
   61 PA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [147-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPEYLTDLIN TNKLYNRTVF TPFHEFHRQT FNKGITPAIS EIKKGKKDVI VTGSALLTSR  60
   61 GIYKMSLNRY ESALLLMLQK KANIPVSLTM KIPSHSVESN SHLKDTEGED FVSINVLSMN 120
  121 RDIRTDYSDN HFKFNVKMDF KIAVSELTFN MDIDKDRKKL TSLITKQLNK DLNNLIHKIQ 180
  181 KQQLDPFGFG DYARAFQYEE WKKVEDDWPS AFSKANVKVA PTIKILENGI IK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.337242
Match:	PF05504.2
Description:	No description for PF05504.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits