YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263525, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263525, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	7.0E-63	[2..355]	[970..1376]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	8.0E-60	[3..355]	[2475..2855]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	7.0E-53	[2..363]	[106..499]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	1.0E-52	[5..361]	[75..463]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	2.0E-52	[3..361]	[76..466]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-52	[2..355]	[18..425]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	3.0E-51	[5..360]	[145..532]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRAKREIS LFQYILTISG VQVGFGVLTL PREVAQGANT DGWMSIIIGC VITTLVSLCI  60
   61 VKIMEKHPGY TLLDVLTRYL GKWLGRIGMI FWILYAVLAA VSLVFSLLYV IHIWILPRSP 120
  121 MFLIMILLSI PMLMLACKGV LIISRFAVFT VIFTLWMPLL LFIPLKDGHW IYLLPFLKEG 180
  181 WIPVVTTVKS TIIAFLGFEF AFVLYPYLTN KPAAKKGIII ANMITLCVYL QVTFVSFVYF 240
  241 SPDGITKFLW PTLSLVTPFH FSFLERFEII FLSFYLFIIF DSCIPYIFTA SDGINQLLNK 300
  301 KGSPLPVWIL LFGCIFVLFF YIPSSYQISA LREFWGTASY FIVFLFPVVF LLYMTLYLHW 360
  361 KRRKI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits