YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263448, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263448, gi|....

Description	E-value	Query Range	Subject Range
gi\|6006681 - gi\|6006681\|gb\|AAF00567.1\| raw starch digesting amylase precursor [Cytophaga sp.]	2.0E-96	[3..513]	[10..519]
gi\|12655802 - gi\|12655802\|gb\|AAK00598.1\| alpha-amylase [Bacillus megaterium]	9.0E-95	[1..513]	[21..533]
gi\|30021585, gi\|... - gi\|30021585\|ref\|NP_833216.1\| cytoplasmic alpha-amylase [Bacillus cereus ATCC 14579], gi\|29897140\|gb\|... gi\|228670089, gi... - gi\|229113367\|ref\|ZP_04242825.1\| Glucan 1,4-alpha-maltohexaosidase [Bacillus cereus Rock1-15], gi\|228...	1.0E-94	[1..513]	[1..513]
AMY_BACAM - Alpha-amylase OS=Bacillus amyloliquefaciens PE=1 SV=1	2.0E-93	[3..513]	[4..514]
gi\|47564614, gi\|... - gi\|47564614\|ref\|ZP_00235659.1\| alpha-amylase [Bacillus cereus G9241], gi\|47558766\|gb\|EAL17089.1\| alp...	3.0E-93	[1..513]	[1..513]
gi\|1667474 - gi\|1667474\|gb\|AAB18785.1\| alpha-amylase [Bacillus sp. MK 716]	1.0E-92	[3..513]	[9..517]
gi\|49329811, gi\|... - gi\|49478255\|ref\|YP_037583.1\| cytoplasmic alpha-amylase [Bacillus thuringiensis serovar konkukian str...	2.0E-92	[1..513]	[1..513]
gi\|227885 - gi\|227885\|prf\|\|1713273A alpha amylase	4.0E-92	[3..513]	[9..517]
AMY_BACLI - Alpha-amylase OS=Bacillus licheniformis GN=amyS PE=1 SV=1	5.0E-92	[1..513]	[7..512]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKITIVGL SVVLFLPSIY GESKVYADTI NNGTLMQYFE WYAPSDRNHW NRLRTDAENL  60
   61 AQKGITSVWI PPAYKGTTQN DVGYGAYDLY DLGEFNQKGT VRTKYGTKAQ LKSAIEALHK 120
  121 QNIDVYGDVV MNHKGGADYT ETVTAVEVDR NNRNVEVSGD YEISAWTGFN FPGRGDNYSN 180
  181 FKWKWYHFDG TDWDEGRKLN RIYKFRGIGK AWDWEVSSEN GNYDYLMYAD LDFDHPDVAN 240
  241 EMKNWGTWYA NELNLDGFRL DAVKHIDHEY LRDWVNHVRQ QTGKEMFTVA EYWQNDIQTL 300
  301 NNYLAKVNYN QSVFDAPLHY NFHYASKGNG NYDMRNILNG TVMQNHPALA VTLVENHDSQ 360
  361 PGQSLESVVS PWFKPLAYAF ILTRAEGYPS VFYGDYYGTS GNSSYEIPAL KDKIDPILTA 420
  421 RKNFAYGTQR DYLDHPDVIG WTREGDSVHA NSGLATLISD GPGGSKWMDV GKNNAGEVWH 480
  481 DMTGNQTNTV TINKDGWGQF HVSGGSVSIY VQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1hvxA
Description:	Bacterial alpha-Amylase; Bacterial alpha-amylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
hydrolase activity	1.107656067558	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: