YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258022, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258022, gi|....

Description	E-value	Query Range	Subject Range
gi\|227894905, gi... - gi\|227894905\|ref\|ZP_04012710.1\| RNA polymerase sigma factor RpoD [Lactobacillus plantarum subsp. pla... gi\|28271441, gi\|... - gi\|28378605\|ref\|NP_785497.1\| RNA polymerase sigma factor RpoD [Lactobacillus plantarum WCFS1], gi\|28...	6.0E-56	[8..239]	[112..349]
gi\|69249285, gi\|... - gi\|69249285\|ref\|ZP_00604924.1\| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 regi... gi\|48823945 - ref\|ZP_00285397.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Enterococc...	1.0E-55	[8..239]	[113..350]
gi\|89079310, gi\|... - gi\|89090874\|ref\|ZP_01163909.1\| Sigma-70 factor [Lactobacillus reuteri JCM 1112], gi\|89079310\|gb\|EAR5... gi\|227364887, gi... - gi\|227364887\|ref\|ZP_03848933.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus reuter... gi\|227531077, gi... - gi\|227531077\|ref\|ZP_03961126.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus reuter...	2.0E-55	[8..239]	[124..361]
gi\|92089653, gi\|... - gi\|92089653\|ref\|ZP_01274588.1\| RNA polymerase sigma factor RpoD-like [Lactobacillus reuteri 100-23],...	3.0E-55	[8..239]	[124..361]
gi\|116494985, gi... - gi\|116494985\|ref\|YP_806719.1\| RNA polymerase sigma factor RpoD [Lactobacillus casei ATCC 334], gi\|11... gi\|191638497, gi... - gi\|191638497\|ref\|YP_001987663.1\| RNA polymerase sigma factor RpoD [Lactobacillus casei BL23], gi\|190... gi\|224453634 - gi\|224453634\|ref\|ZP_03662107.1\| RNA polymerase sigma factor RpoD [Lactobacillus paracasei subsp. par... gi\|227187324, gi... - gi\|227535009\|ref\|ZP_03965058.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus paraca...	5.0E-55	[8..239]	[166..403]
gi\|223932503, gi... - gi\|81096984\|ref\|ZP_00875303.1\| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 regi... gi\|146321288, gi... - gi\|146321288\|ref\|YP_001200999.1\| RNA polymerase sigma factor RpoD [Streptococcus suis 98HAH33], gi\|1... gi\|145689888, gi... - gi\|146319082\|ref\|YP_001198794.1\| RNA polymerase sigma factor RpoD [Streptococcus suis 05ZYH33], gi\|1... gi\|251820209, gi... - gi\|253753963\|ref\|YP_003027104.1\| RNA polymerase sigma factor RpoD [Streptococcus suis P1/7], gi\|2518... gi\|251816427, gi... - gi\|253752138\|ref\|YP_003025279.1\| RNA polymerase sigma factor RpoD [Streptococcus suis SC84], gi\|2518... gi\|253755898, gi... - gi\|253755898\|ref\|YP_003029038.1\| RNA polymerase sigma factor RpoD [Streptococcus suis BM407], gi\|251...	8.0E-55	[1..239]	[111..352]
gi\|229309016, gi... - gi\|229545861\|ref\|ZP_04434586.1\| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1332], gi\|... gi\|229304757, gi... - gi\|229550053\|ref\|ZP_04438778.1\| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29200],... gi\|227073834, gi... - gi\|227518714\|ref\|ZP_03948763.1\| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0104], gi\|... gi\|227553323, gi... - gi\|227553323\|ref\|ZP_03983372.1\| RNA polymerase sigma factor RpoD [Enterococcus faecalis HH22], gi\|22... RPOD_ENTFA - RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2 gi\|238830804, gi... - gi\|238856614\|ref\|ZP_04646879.1\| RNA polymerase sigma factor RpoD [Enterococcus faecalis TUSoD Ef11],... SIGA_ENTFA - RNA polymerase sigma factor SigA OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sigA PE=3 S...	9.0E-55	[8..239]	[112..349]
gi\|769798, gi\|10... - gi\|769798\|emb\|CAA60113.1\| sigma 42 [Enterococcus faecalis], pir\|\|S54114 transcription initiation fac...	1.0E-54	[8..239]	[112..349]
gi\|90961886, gi\|... - gi\|90961886\|ref\|YP_535802.1\| RNA polymerase sigma factor RpoD [Lactobacillus salivarius UCC118], gi\|...	2.0E-54	[8..239]	[116..353]
gi\|55737450, gi\|... - gi\|55821465\|ref\|YP_139907.1\| RNA polymerase sigma factor RpoD [Streptococcus thermophilus LMG 18311]... gi\|55737450 - gb\|AAV61092.1\| DNA directed RNA polymerase sigma 42 protein [Streptococcus thermophilus LMG 18311]	2.0E-54	[2..239]	[106..349]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLVMKILR KPKIEDIVCN IQNNEEDKEA FIVQYQPFIR KSISSVCRRY ITEQDDEYSI  60
   61 GLFAFNEAIE QYSYKKGKSF LAFADLLIKR DVIDYIRKES KHNLVFLKED EQEEMLEMQV 120
  121 SLTEYMKEIE NGNRKEEILH FQSVLADFKI TFSELAKESP KHRDTREHLI EIVKVIIKEE 180
  181 EMMEELFRKK KLPLKHIEPR VRVSRKTLER HRKYIIAMCI IFANNYTYIL DYIRGGKHDE 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1iw7F
Description:	Sigma70
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits