YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263384, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	927 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263384, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478225, gi\|... - gi\|49478225\|ref\|YP_037525.1\| glycosyl transferase and polysaccharide deacetylase fusion [Bacillus th...	0.0	[1..927]	[189..1115]
gi\|52142108, gi\|... - gi\|52142108\|ref\|YP_084722.1\| group-specific protein [Bacillus cereus E33L], gi\|51975577\|gb\|AAU17127....	0.0	[1..927]	[193..1119]
gi\|65320716, gi\|... - gi\|65320716\|ref\|ZP_00393675.1\| COG1215: Glycosyltransferases, probably involved in cell wall biogene...	0.0	[1..927]	[1..927]
gi\|75761290, gi\|... - gi\|75761290\|ref\|ZP_00741270.1\| Polysaccharide deacetylase / Glycosyltransferase [Bacillus thuringie...	0.0	[2..927]	[27..953]
gi\|47558704, gi\|... - gi\|47564552\|ref\|ZP_00235597.1\| putative bi-functional transferase/deacetylase [Bacillus cereus G9241...	0.0	[1..927]	[189..1115]
gi\|87199612, gi\|... - gi\|87199612\|ref\|YP_496869.1\| polysaccharide deacetylase [Novosphingobium aromaticivorans DSM 12444],...	0.0	[2..922]	[166..1099]
gi\|167346630, gi... - gi\|167644200\|ref\|YP_001681863.1\| polysaccharide deacetylase [Caulobacter sp. K31], gi\|167346630\|gb\|A...	0.0	[2..913]	[180..1114]
gi\|56551550, gi\|... - gi\|56551550\|ref\|YP_162389.1\| glycosyltransferase [Zymomonas mobilis subsp. mobilis ZM4], gi\|56543124...	0.0	[1..917]	[174..1120]
gi\|94967428, gi\|... - gi\|94967428\|ref\|YP_589476.1\| polysaccharide deacetylase [Candidatus Koribacter versatilis Ellin345],...	0.0	[3..919]	[194..1148]
gi\|6911992, gi\|2... - gi\|6911992\|emb\|CAB72208.1\| putative bi-functional transferase/deacetylase [Streptomyces coelicolor A...	0.0	[290..918]	[86..710]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSSNDVKT KFINDLVKQV EKNQFAGINI DFEAVPESDR ENLTNFMKEL TMVFHKHDLL  60
   61 VTQDVPANDK AFDYSALAKI IDRMIVMMYD EHYGAGEPGP IASNKWFQHT LKELNIPSNK 120
  121 LIVAFGNYGY DWKVNSKEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	1wawA
Description:	Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
chitinase activity	0.67854733864231	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009
hydrolase activity	0.044302408758218	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [140-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKSLTFSEVM AMAHNSDINI QWDKMSGNPY FRYKTGDKEH TAWFLDGVTL YNQVKIAMDN  60
   61 NAKGFALWRL GAEDPTIWKV LKNPIEAQKN PDVLHKITSL DEVNYSGQGE ILQIENEKQN 120
  121 GLRDFKVGKD GYLTDEVYQS LPSAYEVQRY GKPKGKQVVL TFDDGPDPKY TPEILDILKE 180
  181 NKIKAAFFVL GENAQLNPSI VKRIYDEGHE IGNHTFKHPN VADTSLLRTK VELNTTQRLI 240
  241 QEITGHSTVL FRPPYEADAN PDSSNEILPI LRAQNMNYTM VAEKVDPEDW ATPSTNELVK 300
  301 RALNPVYKGE GNIILLHDAG GNRTHTVEAL PIIIKELKKH GYSFVTISDL MNKERDEIMP 360
  361 PVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [503-801]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEGKQYLLYN KAVFSGAGYF KHILTTIFYI AIGLGIFRFL FLIYFAWKQK RKTLSRTIHS  60
   61 SYQPFVSVVI AAYNEEKVIA KTIRSILDSK YGEFEVIVVD DGSTDGTSKV MQETFYKHPK 120
  121 VRFIQKENGG KSSAMNLGFQ QSRGEIIVTL DADTIIAQDA ISLMVRHFED QNVAAVSGNV 180
  181 KVGNRRNLLT TWQHVEYITG FNLERRAFDE LNCITVVPGA IGAWRKKNVV ESGYLSEDTL 240
  241 AEDTDLTITF LRQGHRIVYE EKAYAFTESP EDVKSLIKQR YRWSYGTLQC LWKHRKALC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #4

Region A:
Residues: [802-927]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKHKTLGFI ALPNMWLFQY VLQFIAPFAD ILMIIGLFSS DPLKVLGFYF VFFLMDLLAS  60
   61 LFAFKLEEEN PKPLVWLILQ RFIYRQFMTY VVVKSIFSSI RGVAVGWNKL KRVGSVEHST 120
  121 EHKEAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: