YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263374, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263374, gi|....

Description	E-value	Query Range	Subject Range
gi\|29897077, gi\|... - gi\|30021522\|ref\|NP_833153.1\| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579], gi\|29... gi\|229128695, gi... - gi\|229128695\|ref\|ZP_04257673.1\| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-Cer4], gi\|...	1.0E-67	[1..299]	[1..299]
gi\|52142118, gi\|... - gi\|52142118\|ref\|YP_084710.1\| PhzF family phenazine biosynthesis protein [Bacillus cereus E33L], gi\|5...	3.0E-67	[1..299]	[1..299]
gi\|49479950, gi\|... - gi\|49479950\|ref\|YP_037517.1\| PhzF family phenazine biosynthesis protein [Bacillus thuringiensis sero...	3.0E-67	[1..299]	[1..299]
gi\|42782484, gi\|... - gi\|42782484\|ref\|NP_979731.1\| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC 10987]...	3.0E-67	[1..299]	[1..299]
gi\|65320704, gi\|... - gi\|65320704\|ref\|ZP_00393663.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Bacillus anthracis s...	9.0E-67	[1..299]	[1..299]
gi\|228857749, gi... - gi\|228901897\|ref\|ZP_04066065.1\| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL 4222... gi\|218898478, gi... - gi\|218898478\|ref\|YP_002446889.1\| phenazine biosynthesis protein, PhzF family [Bacillus cereus G9842]... gi\|75760476, gi\|... - gi\|75760476\|ref\|ZP_00740515.1\| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar i...	9.0E-67	[1..299]	[1..299]
gi\|47564540, gi\|... - gi\|47564540\|ref\|ZP_00235585.1\| phenazine biosynthesis protein PhzF family, putative [Bacillus cereus...	1.0E-63	[1..299]	[1..299]
gi\|89088505, gi\|... - gi\|89096490\|ref\|ZP_01169382.1\| hypothetical protein B14911_12657 [Bacillus sp. NRRL B-14911], gi\|890...	2.0E-62	[1..297]	[1..297]
gi\|163863232, gi... - gi\|89206474\|ref\|ZP_01185032.1\| Phenazine biosynthesis PhzC/PhzF protein [Bacillus weihenstephanensis...	2.0E-62	[1..299]	[1..299]
YJ50_BACHD, Y195... - (Q9KBH7) Hypothetical protein BH1950, Uncharacterized isomerase BH1950 OS=Bacillus halodurans GN=BH1... Y1950_BACHD - Uncharacterized isomerase BH1950 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344...	3.0E-62	[1..299]	[1..295]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTINVFHYD AFTNKPNMGN PAGIVLDADG LTEEEMQRIA EKVGFNETSF VLSSEVADIR  60
   61 MRYFTPGYEM DLCGHGTVGT IYALRERGLL EEKASLTIET KAGILPIQIG VNENGETFIK 120
  121 MRQTAPQFKD FAGSKEELAH SIGLEVNDLD VSLPIVYGST GNWTVIVPVK NLDVCERMKP 180
  181 NNEVFPSVLK EIPNASIHPI CLETYDEKVH MHGRHFSSAY AGTIEDPVTG TASGVMGAYY 240
  241 ATYVEKDFDH EMELIVEQGQ EIHKDGRVTV YVTKDVESEK LQIDIAGTAV YVKEFEVLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1sdjA
Description:	X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00848565859536	bayes_pls_golite062009
amino-acid racemase activity	0.0628393252100677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: