YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257991, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257991, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	2.0E-62	[31..412]	[977..1380]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	2.0E-61	[12..408]	[2462..2855]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	8.0E-54	[18..410]	[12..427]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	2.0E-52	[16..439]	[67..505]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	2.0E-51	[29..436]	[77..499]
gi\|114193530, gi... - gi\|115396644\|ref\|XP_001213961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	4.0E-51	[8..439]	[2..445]
gi\|50753798 - gi\|50753798\|ref\|XP_414136.1\| PREDICTED: similar to system asc amino acid transporter Asc-1 [Gallus g...	6.0E-51	[42..439]	[389..781]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	7.0E-51	[16..434]	[98..520]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNTAKKIE VQAENTALNN EQYADPKKWH KQDTTWALSL FGTAIGAGVL FLPINAGSGG  60
   61 LLSLLLITLL AYPVMYYSHR ALAKMIYASN SADEGITGTI REYFGNKASI IFNIVYFGSI 120
  121 YTIVLMYSVA LTNTASSFIV HQLHMPEPPR AILSLVLVLG LIAILNFGQD ITVKVMSMLV 180
  181 YPFIVSLLFI AISLIPQWNT SMLSFSAVST ASTGTGYFGT IVMILPIIVF SFNHSPMISS 240
  241 FVVKQRATYG IEATDAKCAQ IQKVCYIMTF AVVMFFVWSS ALSLTPDDIK MAKEQNLLIL 300
  301 SYLANELNSP VITIAAPIIA FVAITKSFLG HYIGAFEVMR DMIIKFGKSR GKDIEEKTIK 360
  361 TIILTFVVLS CWFVAYTNPS ILGLIDSLSG PLVAAILCLL PMYAIQKVPV LAKYKGKMSN 420
  421 VFVIIVGVLT VLASIKSLF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.62
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits