YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257913, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257913, gi|....

Description	E-value	Query Range	Subject Range
gi\|47558598, gi\|... - gi\|47564446\|ref\|ZP_00235491.1\| extracellular ribonuclease [Bacillus cereus G9241], gi\|47558598\|gb\|EA...	0.0	[1..275]	[1..275]
gi\|89206549, gi\|... - gi\|89206549\|ref\|ZP_01185106.1\| Endonuclease I [Bacillus weihenstephanensis KBAB4], gi\|89155549\|gb\|EA... gi\|228649276, gi... - gi\|229134168\|ref\|ZP_04262986.1\| Extracellular ribonuclease [Bacillus cereus BDRD-ST196], gi\|22864927... gi\|228748680, gi... - gi\|229012520\|ref\|ZP_04169694.1\| Extracellular ribonuclease [Bacillus mycoides DSM 2048], gi\|22874868...	0.0	[1..275]	[1..275]
BSN2_BACSU - Extracellular ribonuclease OS=Bacillus subtilis GN=bsn PE=3 SV=1 gi\|221315525 - gi\|221315525\|ref\|ZP_03597330.1\| hypothetical protein BsubsN3_17572 [Bacillus subtilis subsp. subtili... gi\|221320440 - gi\|221320440\|ref\|ZP_03601734.1\| hypothetical protein BsubsJ_17535 [Bacillus subtilis subsp. subtilis... gi\|221324724 - gi\|221324724\|ref\|ZP_03606018.1\| hypothetical protein BsubsS_17686 [Bacillus subtilis subsp. subtilis... BSN2_BACSU - Extracellular ribonuclease OS=Bacillus subtilis (strain 168) GN=bsn PE=3 SV=1	0.0	[9..274]	[27..287]
gi\|68055556, gi\|... - gi\|68055556\|ref\|ZP_00539700.1\| Endonuclease I [Exiguobacterium sibiricum 255-15], gi\|68007869\|gb\|EAM...	0.0	[17..274]	[13..271]
gi\|1621212 - gi\|1621212\|emb\|CAA66713.1\| birII [Bacillus intermedius]	0.0	[14..275]	[30..292]
gi\|23100313, gi\|... - gi\|23100313\|ref\|NP_693780.1\| extracellular ribonuclease [Oceanobacillus iheyensis HTE831], gi\|227785...	0.0	[9..275]	[127..392]
BSN1_BACSU - (Q03091) Extracellular ribonuclease precursor (EC 3.1.-.-) BSN1_BACAM - Extracellular ribonuclease OS=Bacillus amyloliquefaciens GN=bsn PE=1 SV=1	0.0	[35..274]	[50..289]
gi\|6714813, gi\|2... - gi\|6714813\|emb\|CAB66305.1\| putative secreted ribonuclease [Streptomyces coelicolor A3(2)], gi\|212212...	1.0E-97	[44..274]	[56..286]
gi\|89089453, gi\|... - gi\|89095707\|ref\|ZP_01168601.1\| Endonuclease/Exonuclease/phosphatase family protein [Bacillus sp. NRR...	1.0E-94	[28..274]	[1288..1528]
gi\|51490739\|emb\|... - extracellular ribonuclease [Bacillus megaterium] gi\|51490739 - gi\|51490739\|emb\|CAH18713.1\| extracellular ribonuclease [Bacillus megaterium]	2.0E-94	[9..275]	[117..382]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRNTKLAM VTLSSFFILG SASLSFTNII QGEVASASPQ EITVKSYDDT YYNNAIGKTG  60
   61 LELKKELHNI IDDHTKLSYS AVWEALRDTD EDPNNKNNVI LLYTGRSQGK LTNGSGVDNW 120
  121 NREHVWAKSH GDFGTTAGPG TDLHHLRATD VSVNSSRGNL DFDNGGVNHS EATECKYDSD 180
  181 SWEPRDSVKG DIARMLFYMA VRYEGDNGEI DLELNEKVNN NKDPYMGKLS VLLKWNEQDP 240
  241 VDDLERKRNE VIFTKYQHNR NPFIDHPEWV NKIWN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1ouoA
Description:	Crystal structure of the periplasmic endonuclease Vvn
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits