YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263267, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263267, gi|....

Description	E-value	Query Range	Subject Range
gi\|42782370, gi\|... - gi\|42782370\|ref\|NP_979617.1\| quinone family NAD(P)H dehydrogenase [Bacillus cereus ATCC 10987], gi\|4...	5.0E-40	[1..191]	[1..191]
gi\|163863157, gi... - gi\|89206535\|ref\|ZP_01185092.1\| NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase [Bacill...	7.0E-40	[1..191]	[1..191]
gi\|52142241, gi\|... - gi\|52142241\|ref\|YP_084589.1\| quinone family NAD(P)H dehydrogenase [Bacillus cereus E33L], gi\|5197571...	1.0E-39	[1..191]	[1..191]
gi\|222096768, gi... - gi\|222096768\|ref\|YP_002530825.1\| NAD(P)H dehydrogenase (quinone) [Bacillus cereus Q1], gi\|221240826\|... gi\|217063540, gi... - gi\|217960714\|ref\|YP_002339278.1\| NAD(P)H dehydrogenase, quinone family [Bacillus cereus AH187], gi\|2... gi\|206974595, gi... - gi\|206974595\|ref\|ZP_03235511.1\| NAD(P)H dehydrogenase, quinone family [Bacillus cereus H3081.97], gi... gi\|49329720, gi\|... - gi\|49478164\|ref\|YP_037422.1\| NAD(P)H dehydrogenase (quinone) [Bacillus thuringiensis serovar konkuki...	2.0E-39	[1..191]	[1..191]
gi\|228901802, gi... - gi\|228901802\|ref\|ZP_04065973.1\| NADPH dehydrogenase [Bacillus thuringiensis IBL 4222], gi\|228857823\|... gi\|75760950, gi\|... - gi\|75760950\|ref\|ZP_00740958.1\| NAD(P)H dehydrogenase (quinone) [Bacillus thuringiensis serovar israe...	2.0E-39	[1..191]	[1..191]
gi\|47564434, gi\|... - gi\|47564434\|ref\|ZP_00235479.1\| oxidoreductase, putative [Bacillus cereus G9241], gi\|47558586\|gb\|EAL1...	4.0E-39	[1..191]	[1..191]
gi\|21401232, gi\|... - gi\|65320599\|ref\|ZP_00393558.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity...	5.0E-39	[1..191]	[1..191]
gi\|73668836, gi\|... - gi\|73668836\|ref\|YP_304851.1\| putative NAD(P)H oxidoreductase(quinone) [Methanosarcina barkeri str. F...	2.0E-36	[1..191]	[1..213]
gi\|86747949, gi\|... - gi\|86747949\|ref\|YP_484445.1\| NAD(P)H dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2], gi\|8...	2.0E-36	[1..191]	[1..219]
gi\|15966669 - gi\|15966669\|ref\|NP_387022.1\| putative NADPH dehydrogenase quinone reductase transmembrane protein [S... gi\|15075941 - gi\|15075941\|emb\|CAC47495.1\| Putative NADPH dehydrogenase quinone reductase transmembrane protein [Si...	3.0E-36	[1..191]	[1..219]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLIVYAHP SPSSFNAAIL KHVQKGLQET NHSVTVLDLY KEQFNPVLVF NEEKKRRDLV  60
   61 NEEETARYRA LVEEADTLLF IYPIWWWGMP AILKGFIDRI FVAGFAYKYE GALPKGLLKG 120
  121 KKAWGINTLD SPLWYVALLY RSADWIIMKR GVLRFCGIRD IKRSVFQSVK TSKREKREKW 180
  181 LLQIEEKART L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.045757
Match:	1qrdA
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009
binding	0.159285483239364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: