YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257881, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257881, gi|....

Description	E-value	Query Range	Subject Range
gi\|52142253, gi\|... - gi\|52142253\|ref\|YP_084577.1\| S-layer protein [Bacillus cereus E33L], gi\|51975722\|gb\|AAU17272.1\| S-la...	311.0	[0..1]	[360..1]
gi\|49478151, gi\|... - gi\|49478151\|ref\|YP_037402.1\| S-layer domain-containing protein [Bacillus thuringiensis serovar konku...	304.0	[0..1]	[358..1]
gi\|65320579 - gi\|65320579\|ref\|ZP_00393538.1\| hypothetical protein Bant_01003997 [Bacillus anthracis str. A2012]	301.0	[0..14]	[360..3]
gi\|47558565, gi\|... - gi\|47564413\|ref\|ZP_00235458.1\| internalin [Bacillus cereus G9241], gi\|47558565\|gb\|EAL16888.1\| intern...	297.0	[0..14]	[360..14]
gi\|53764806, gi\|... - gi\|75910426\|ref\|YP_324722.1\| hypothetical protein Ava_4228 [Anabaena variabilis ATCC 29413], gi\|7570...	245.0	[0..7]	[355..331]
gi\|17229109, gi\|... - gi\|17229109\|ref\|NP_485657.1\| hypothetical protein all1617 [Nostoc sp. PCC 7120], gi\|17135437\|dbj\|BAB... gi\|25530613 - pir\|\|AC2008 hypothetical protein all1617 [imported] - Nostoc sp. (strain PCC 7120)	243.0	[0..7]	[343..332]
gi\|42780301, gi\|... - gi\|42780301\|ref\|NP_977548.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42736220\|gb\|...	216.0	[0..2]	[215..51]
gi\|89095946, gi\|... - gi\|89095946\|ref\|ZP_01168840.1\| hypothetical protein B14911_04414 [Bacillus sp. NRRL B-14911], gi\|890...	215.0	[0..48]	[353..217]
gi\|29894824, gi\|... - gi\|30019281\|ref\|NP_830912.1\| S-layer-like domain-containing protein [Bacillus cereus ATCC 14579], gi...	213.0	[0..9]	[216..4]
gi\|254737343 - gi\|254737343\|ref\|ZP_05195047.1\| putative S-layer protein [Bacillus anthracis str. Western North Amer... gi\|254722304 - gi\|254722304\|ref\|ZP_05184092.1\| putative S-layer protein [Bacillus anthracis str. A1055] gi\|254684896 - gi\|254684896\|ref\|ZP_05148756.1\| putative S-layer protein [Bacillus anthracis str. CNEVA-9066] gi\|229121870, gi... - gi\|229121870\|ref\|ZP_04251089.1\| hypothetical protein bcere0016_21690 [Bacillus cereus 95/8201], gi\|2... gi\|254760178 - gi\|254760178\|ref\|ZP_05212202.1\| putative S-layer protein [Bacillus anthracis str. Australia 94] gi\|254751659 - gi\|254751659\|ref\|ZP_05203696.1\| putative S-layer protein [Bacillus anthracis str. Vollum] gi\|254743472 - gi\|254743472\|ref\|ZP_05201157.1\| putative S-layer protein [Bacillus anthracis str. Kruger B] gi\|47502762, gi\|... - gi\|47527614\|ref\|YP_018963.1\| S-layer protein, putative [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30256954, gi\|... - gi\|30262323\|ref\|NP_844700.1\| S-layer protein, putative [Bacillus anthracis str. Ames], gi\|30256954\|g... gi\|227003296, gi... - gi\|227814868\|ref\|YP_002814877.1\| putative S-layer protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|218903456, gi... - gi\|218903456\|ref\|YP_002451290.1\| putative S-layer protein [Bacillus cereus AH820], gi\|218540044\|gb\|A... gi\|49185169, gi\|... - gi\|49185169\|ref\|YP_028421.1\| S-layer protein, putative [Bacillus anthracis str. Sterne], gi\|49179096...	212.0	[0..21]	[232..3]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRKTSKVKK FLGFVLTAAL ATTTMVGTAN AQTTTNSYKV ASNENTVFTD VPKDHWSKDA  60
   61 IDYLAAAGIY KGYGNGKFGF GDNITRGQVA SLVNRHLGLI ADDKQGNMFS DITNHMFEKD 120
  121 IKAIAQAGIM TGDGTGTFRP DDVLTRYEMA VILQKAFHLE SKEQGKFKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPKGHWAYEA VNTLRSNRIA QGDEAGNFNG NTFVKREQYA QFFYNAIAKN R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [221-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYNFNINSKE EMKQMLTTAL ENGTFGPFQL DVLGKDLSDV KKEYGVPDVW KKAPCTECDA  60
   61 PNIAVYGDYN IDMYPSDARY ISVKMDITIN ELKEWFGEPD GIGEDMTSEG FIYNRGSYSL 120
  121 YFSFSDGYIQ RAEISKNKFN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits