YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49180021, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49180021, gi|....

Description	E-value	Query Range	Subject Range
gi\|29896920, gi\|... - gi\|30021366\|ref\|NP_832997.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 14579], gi\|298...	3.0E-79	[1..338]	[98..442]
gi\|42782348, gi\|... - gi\|42782348\|ref\|NP_979595.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42738273\|gb\|...	4.0E-79	[1..338]	[254..591]
gi\|228934545, gi... - gi\|228934545\|ref\|ZP_04097380.1\| N-acetylmuramoyl-L-alanine amidase / S-layer protein [Bacillus thuri... gi\|49479019, gi\|... - gi\|49479019\|ref\|YP_037356.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	6.0E-78	[1..338]	[254..591]
gi\|47558560, gi\|... - gi\|47564408\|ref\|ZP_00235453.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9241], gi\|475585...	8.0E-78	[1..338]	[254..591]
gi\|52142261, gi\|... - gi\|52142261\|ref\|YP_084569.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	4.0E-77	[1..338]	[254..591]
gi\|74493070, gi\|... - gi\|75759457\|ref\|ZP_00739550.1\| N-acetylmuramoyl-L-alanine amidase / S-layer protein [Bacillus thuri...	2.0E-66	[1..337]	[193..543]
gi\|83590969, gi\|... - gi\|83590969\|ref\|YP_430978.1\| hypothetical protein Moth_2145 [Moorella thermoacetica ATCC 39073], gi\|...	5.0E-48	[18..338]	[320..628]
gi\|1235795 - gi\|1235795\|gb\|AAB00841.1\| pullulanase [Thermoanaerobacterium thermosulfurigenes]	9.0E-47	[29..337]	[1544..1859]
gi\|53764806, gi\|... - gi\|75910426\|ref\|YP_324722.1\| hypothetical protein Ava_4228 [Anabaena variabilis ATCC 29413], gi\|7570...	2.0E-46	[4..338]	[331..678]

Back

Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDGDYNKA LENAKRLAGY LMNKEGISAD HIYRHQQWSG KNCPDILISR GNWTGFVQGI  60
   61 QWYANVNAQI DS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.09691
Match:	2ar3A
Description:	No description for 2ar3A was found.

Predicted Domain #2

Region A:
Residues: [73-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLQERNELFD SNEYNPAEPN MELVVKGDGI NVRSGAGLEH QTVRKASNGD RYKVLAVKNG  60
   61 WYKVGNDEWI FYNPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [148-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIKINYNVPN KEVQKPKDDI TGGWFEGHIR KLNSLGIMHG EGNGVFAPYR NVTRAEFATL  60
   61 ISNALKLPEG NKTFVDINKA HPSLHNGIKR SASAGIINGR GGGIFDPNAS ITREEASIMI 120
  121 DKALQYKGVT GELAALPFTD QHLITYKQHV QRLYSLKVVT GVGNNEFNPK GTTTRGEAAA 180
  181 FLVKMLDASQ K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits