YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263220, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263220, gi|....

Description	E-value	Query Range	Subject Range
gi\|89200780, gi\|... - gi\|89200780\|ref\|ZP_01179530.1\| Iron-sulfur-dependent L-serine dehydratase beta subunit [Bacillus cer...	3.0E-57	[13..232]	[1..219]
gi\|254852720 - gi\|254852720\|ref\|ZP_05242068.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL R2-503... gi\|254826145 - gi\|254826145\|ref\|ZP_05231146.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-194... gi\|225876878, gi... - gi\|226224416\|ref\|YP_002758523.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes Clip81459... gi\|255521928 - gi\|255521928\|ref\|ZP_05389165.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J1-175... gi\|254994429 - gi\|254994429\|ref\|ZP_05276619.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-064... gi\|254878069 - gi\|254878069\|ref\|ZP_05250779.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes FSL J2-071... gi\|46881315, gi\|... - gi\|46908045\|ref\|YP_014434.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria mon... gi\|126943595, gi... - gi\|254899490\|ref\|ZP_05259414.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J0161], gi... gi\|153167657, gi... - gi\|153167657\|ref\|ZP_01927761.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Listeria ... gi\|127765100, gi... - gi\|254912371\|ref\|ZP_05262383.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes J2818], gi... gi\|153202811, gi... - gi\|254933285\|ref\|ZP_05266644.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes HPB2262], ... gi\|254936698, gi... - gi\|254936698\|ref\|ZP_05268395.1\| L-serine dehydratase (beta chain) [Listeria monocytogenes F6900], gi...	6.0E-56	[14..229]	[1..215]
gi\|94542990, gi\|... - gi\|94989482\|ref\|YP_597583.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS9429], gi\|... gi\|94546877, gi\|... - gi\|94993369\|ref\|YP_601468.1\| L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS2096], gi...	8.0E-56	[13..231]	[5..223]
gi\|56808668 - gi\|56808668\|ref\|ZP_00366392.1\| COG1760: L-serine deaminase [Streptococcus pyogenes M49 591]	8.0E-56	[13..231]	[3..221]
gi\|71904535, gi\|... - gi\|71904535\|ref\|YP_281338.1\| L-serine dehydratase [Streptococcus pyogenes MGAS6180], gi\|71803630\|gb\|...	8.0E-56	[13..231]	[5..223]
gi\|94995353, gi\|... - gi\|94995353\|ref\|YP_603451.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS10750], gi... gi\|94991469, gi\|... - gi\|94991469\|ref\|YP_599569.1\| L-serinedehydratase beta subunit [Streptococcus pyogenes MGAS10270], gi... gi\|50904278, gi\|... - gi\|50915204\|ref\|YP_061176.1\| L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS10394], g...	1.0E-55	[13..231]	[5..223]
gi\|19749280, gi\|... - gi\|19749280\|gb\|AAL98657.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS82... gi\|134272857, gi... - gi\|139474610\|ref\|YP_001129326.1\| putative L-serine dehydratase, beta chain [Streptococcus pyogenes s... gi\|28812003, gi\|... - gi\|28896749\|ref\|NP_803099.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes SSI-... gi\|21911377, gi\|... - gi\|21911377\|ref\|NP_665645.1\| putative L-serine dehydratase beta subunit [Streptococcus pyogenes MGAS...	1.0E-55	[13..231]	[3..221]
gi\|89154113, gi\|... - gi\|89207935\|ref\|ZP_01186462.1\| Iron-sulfur-dependent L-serine dehydratase beta subunit [Bacillus wei...	1.0E-55	[13..232]	[1..219]
gi\|182628406, gi... - gi\|182683072\|ref\|YP_001834819.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoc... gi\|194397086, gi... - gi\|194397086\|ref\|YP_002036818.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoc... gi\|220673501, gi... - gi\|221231041\|ref\|YP_002510193.1\| putative L-serine dehydratase, beta chain [Streptococcus pneumoniae... gi\|172042964, gi... - gi\|172042964\|gb\|EDT51010.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcus... gi\|168489423, gi... - gi\|183572127\|gb\|EDT92655.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcus... gi\|242235168, gi... - gi\|242246336\|ref\|ZP_04800773.1\| L-serine ammonia-lyase [Streptococcus pneumoniae TCH8431/19A], gi\|24... gi\|168492418, gi... - gi\|183573438\|gb\|EDT93966.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcus... gi\|237821344 - gi\|237821344\|ref\|ZP_04597189.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|183576188, gi... - gi\|183576188\|gb\|EDT96716.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcus... gi\|237650917 - gi\|237650917\|ref\|ZP_04525169.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|183577289, gi... - gi\|183577289\|gb\|EDT97817.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcus... gi\|225727062, gi... - gi\|225860141\|ref\|YP_002741650.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoc... gi\|149007919, gi... - gi\|149007919\|ref\|ZP_01831497.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|225855886, gi... - gi\|225855886\|ref\|YP_002737397.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoc... gi\|147760266, gi... - gi\|149001808\|ref\|ZP_01826781.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|225853731, gi... - gi\|225853731\|ref\|YP_002735243.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoc... gi\|148996513, gi... - gi\|148996513\|ref\|ZP_01824231.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|148994301, gi... - gi\|148994301\|ref\|ZP_01823565.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|147926300, gi... - gi\|148987836\|ref\|ZP_01819299.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|148985451, gi... - gi\|148985451\|ref\|ZP_01818656.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|147931343, gi... - gi\|149017779\|ref\|ZP_01834238.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|149010968, gi... - gi\|149010968\|ref\|ZP_01832273.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptoco... gi\|116076700, gi... - gi\|116516124\|ref\|YP_815593.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococc... gi\|25388162, gi\|... - pir\|\|G97883 L-serine ammonia-lyase (EC 4.3.1.17) beta chain [imported] - Streptococcus pneumoniae (s... gi\|66877127, gi\|... - gi\|66877127\|ref\|ZP_00402768.1\| COG1760: L-serine deaminase [Streptococcus pneumoniae TIGR4], gi\|1590... gi\|15457631, gi\|... - gi\|15902139\|ref\|NP_357689.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu...	1.0E-55	[12..231]	[2..221]
gi\|76562683, gi\|... - gi\|76787626\|ref\|YP_330693.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|77160758, gi\|... - gi\|77413218\|ref\|ZP_00789416.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|77161464, gi\|... - gi\|77412488\|ref\|ZP_00788789.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|77408907, gi\|... - gi\|77408907\|ref\|ZP_00785632.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|25012139, gi\|... - gi\|25012139\|ref\|NP_736534.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|77406512, gi\|... - gi\|77406512\|ref\|ZP_00783565.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ... gi\|22538279, gi\|... - gi\|22538279\|ref\|NP_689130.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococcu... gi\|76585787, gi\|... - gi\|76798864\|ref\|ZP_00781073.1\| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Streptococ...	1.0E-55	[12..231]	[2..220]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINVASMKE KKVVKYKSCF DVIGPIMIGP SSSHTAGALS IGTVANKLFQ GLPKKVVVTY  60
   61 YESFAETHKG HGTDFAIIAG ILGFAADDSK VPDAIKIAES KGIDITFIEK SGDSPAGHPN 120
  121 TADVYVEDDS RSIRTMGISV GGGLIEVKHV EIDGFSLELQ GPLPVVIAIS ERADFEFVLR 180
  181 RIFKQYDVEI NNFHSLKDKT KYLYAFALDS LLPGNAQKEL GNLSNIANLI IL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1ygyA
Description:	Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits