YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263218, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263218, gi|....

Description	E-value	Query Range	Subject Range
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	5.0E-59	[6..407]	[2455..2854]
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	5.0E-58	[20..412]	[966..1380]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-50	[18..410]	[12..427]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	4.0E-50	[14..439]	[65..505]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	5.0E-50	[27..436]	[75..499]
gi\|114193530, gi... - gi\|115396644\|ref\|XP_001213961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	7.0E-49	[8..439]	[2..445]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	1.0E-48	[17..430]	[99..516]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	3.0E-48	[21..436]	[139..569]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNTAKNIE FQVDNTTVKN EKYLDPKKWH KQDTTWALSL FGTAIGAGVL FLPINAGSGG  60
   61 LLSLLLITIL AYPVMYYSHR ALAKMIYASN SADEGITGTI REYFGNKASI IFNIVYFVSI 120
  121 YTIVLMYSVA LTNTASSFIV HQLHMPEPPR AILSLVLVIG LITILNFGQD ITVKIMSMLV 180
  181 YPFIASLLFI AISLIPQWNT SMLSFSSVST ASTGTGYFGT IWMILPIIVF SFNHSPMISS 240
  241 FVMKQRATYG IDATDAKCAQ IQKVCYIMTF AVVMFFVWSS TLSLTPDDLK VAKEQNLSIL 300
  301 SYLANELNSP VITIAAPIIA FVAITKSFLG HYIGAYEVMR DMIIKSGKKR GKDIGEKTVK 360
  361 TMILTFVVLT CWYVAYTNPS ILGIIDALSG PLVAAILCLL PMYAIRKVPV LAKYRGKMSN 420
  421 VFVIIIGILT VLASIKSLF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.73
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits