YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257780, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	691 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257780, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975795, gi\|... - gi\|52142326\|ref\|YP_084503.1\| penicillin-binding protein [Bacillus cereus E33L], gi\|51975795\|gb\|AAU17...	709.0	[0..1]	[691..1]
gi\|228654974, gi... - gi\|229128471\|ref\|ZP_04257450.1\| hypothetical protein bcere0015_29170 [Bacillus cereus BDRD-Cer4], gi... gi\|29896851, gi\|... - gi\|30021297\|ref\|NP_832928.1\| penicillin-binding protein [Bacillus cereus ATCC 14579], gi\|29896851\|gb...	691.0	[0..1]	[691..2]
gi\|89155520, gi\|... - gi\|89206520\|ref\|ZP_01185077.1\| Beta-lactamase [Bacillus weihenstephanensis KBAB4], gi\|89155520\|gb\|EA...	660.0	[0..1]	[691..1]
gi\|89202028, gi\|... - gi\|89202028\|ref\|ZP_01180759.1\| Beta-lactamase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8914...	655.0	[0..1]	[691..1]
gi\|25499162 - pir\|\|E97245 beta-lactamase class C domain (PBPX family) containing protein [imported] - Clostridium ... gi\|15025849, gi\|... - gi\|15896063\|ref\|NP_349412.1\| beta-lactamase class C domain-containing protein [Clostridium acetobuty...	620.0	[0..34]	[691..73]
gi\|74487985, gi\|... - gi\|75764526\|ref\|ZP_00743999.1\| Penicillin-binding protein [Bacillus thuringiensis serovar israelensi...	527.0	[0..207]	[691..1]
gi\|126699073, gi... - gi\|126699073\|ref\|YP_001087970.1\| cell surface protein (putative penicillin-binding protein) [Clostri...	456.0	[0..2]	[690..3]
gi\|145955232, gi... - gi\|90575086\|ref\|ZP_01231573.1\| hypothetical protein CdifQ_02001522 [Clostridium difficile QCD-32g58]...	448.0	[0..55]	[690..1]
gi\|36783611, gi\|... - gi\|37524188\|ref\|NP_927532.1\| hypothetical protein plu0166 [Photorhabdus luminescens subsp. laumondii...	354.0	[0..46]	[587..16]

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Predicted Domain #1

Region A:
Residues: [1-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKLSGVLA ATLALTMSLP TGAIASSSSK TPVVSSQEVA SKDLEKIAAE NAALLTKSYE  60
   61 TTSVQYALID NGKLILSGQT GKNDIEGKEP LTKDTLYGIG STSKVYTAAA VMKLVDEGKV 120
  121 DLDASVTRYI PEFKMKDERY KRITPRMLLN HSSGLQGSTL NNAFLFKDND VYAHDILLQQ 180
  181 LSNQNLKADP GAFSVYCNDG FTLAEILVER VSGMSFTEFL HQKFTEPLKL NHTITSQDKW 240
  241 EDEKRAGQYS PTYQGQLPSE MVNVIGTGGI SSTAEDVVRF SQIFMGQGKE ILSNKAVKAM 300
  301 EQEEYKKGMW PGDSGNVFNY GLGWDSVKLY PFSEYGIKAL TKGGDTMLQH ATLVVLPEQK 360
  361 MAAAVLSSGG SSMTNQLLAN KLLLARLKEK GTIKDIKPDR SFGKPVKAKV PQDVVKKAGF 420
  421 YGNSYSHFKI EITKKGELFL PTKPEEKYVY TADGSFINEK GTSKLNFVTE KNGKVYLRES 480
  481 AYELSPGLGQ NVLTHYLAQK LENNVLPKKT AAAWAKREGG KFYLVNEKFN SINYLGQQIP 540
  541 LNTQITLKDG YWDGKKITGP NTATHQIQIP VMNGRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.69897
Match:	1ei5A
Description:	D-aminopeptidase, middle and C-terminal domains; D-aminopeptidase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [577-691]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKEAHFYTED GTEYMEMSSF LYVSESNVKS LDTGQLSKVT LQKSGHAKWF TIPQEAAGKT  60
   61 MNVELPSGSS FAVYDENGVC VNFSVVSNNN KVKLPENGTV VFAGAPNSEF TVALN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits