YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49179894, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49179894, gi|....

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	2.0E-45	[6..303]	[972..1259]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	5.0E-44	[3..294]	[70..356]
gi\|68202151, gi\|... - gi\|68230245\|ref\|ZP_00569431.1\| Protoheme IX farnesyltransferase [Frankia sp. EAN1pec], gi\|68202151\|g...	1.0E-43	[3..284]	[228..505]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	1.0E-43	[13..294]	[122..395]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	1.0E-43	[11..294]	[84..362]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	4.0E-42	[7..294]	[68..350]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	4.0E-42	[7..294]	[118..400]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	6.0E-42	[4..302]	[626..968]
gi\|50746583 - gi\|50746583\|ref\|XP_420564.1\| PREDICTED: similar to hypothetical protein CL640 [Gallus gallus]	7.0E-42	[7..294]	[74..356]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	9.0E-42	[7..294]	[58..340]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEKEISSA KLIWKMTRPH TLTATFSPVI LGTVASLYVA KIDWLLFIAM MVACLALQIA  60
   61 TNLFNEYYDF KRGLDTADSV GIGGGIVRHG LKPKNVLTVA LLLYVVAAII GVYICMNSSW 120
  121 WLVVIGLIGM AVGYLYTGGP LPIAYTPFGE LVSGLLMGTC FVLIAFFIQT N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TITTESVLIS IPIGILVGAI NMSNNIRDIE EDIKGGRKTL VILLGREKAV VTLAIAFFIA  60
   61 YLWIAVIVWM GYISPWALVM FLGLRKPISA IQSFQKGAKD PGYMRIAMKS TAMTNTIFGF 120
  121 LLSAGLLISY LF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits