YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49179861, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49179861, gi|....

Description	E-value	Query Range	Subject Range
gi\|47564272, gi\|... - gi\|47564272\|ref\|ZP_00235317.1\| YndD [Bacillus cereus G9241], gi\|47558424\|gb\|EAL16747.1\| YndD [Bacill...	0.0	[1..437]	[88..524]
gi\|51975858, gi\|... - gi\|52142389\|ref\|YP_084440.1\| spore germination protein [Bacillus cereus E33L], gi\|51975858\|gb\|AAU174...	0.0	[1..437]	[88..524]
gi\|49329578, gi\|... - gi\|49478022\|ref\|YP_037228.1\| GerA family spore germination protein [Bacillus thuringiensis serovar k...	0.0	[1..437]	[1..437]
gi\|65320405, gi\|... - gi\|65320405\|ref\|ZP_00393364.1\| COG0477: Permeases of the major facilitator superfamily [Bacillus ant...	0.0	[1..437]	[1..437]
gi\|75763164, gi\|... - gi\|75763164\|ref\|ZP_00742933.1\| Spore germination protein BA [Bacillus thuringiensis serovar israelen...	0.0	[1..432]	[86..517]
GERKA_BACSU - Spore germination protein KA OS=Bacillus subtilis (strain 168) GN=gerKA PE=3 SV=2 GRKA_BACSU, GERK... - (P49939) Spore germination protein KA, Spore germination protein KA OS=Bacillus subtilis GN=gerKA PE... gi\|221312506 - gi\|221312506\|ref\|ZP_03594311.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221317443 - gi\|221317443\|ref\|ZP_03598737.1\| germination response to the combination of glucose, fructose, L-aspa... gi\|221321705 - gi\|221321705\|ref\|ZP_03602999.1\| germination response to the combination of glucose, fructose, L-aspa...	0.0	[3..436]	[75..517]
gi\|83573786, gi\|... - gi\|83590872\|ref\|YP_430881.1\| GerA spore germination protein [Moorella thermoacetica ATCC 39073], gi\|...	0.0	[20..436]	[123..539]
gi\|2204284 - gi\|2204284\|gb\|AAB61393.1\| germination protein	0.0	[3..437]	[84..515]
gi\|1063254, gi\|2... - pir\|\|I39858 germination response gerKA protein - Bacillus subtilis, gi\|1063254\|dbj\|BAA11254.1\| GerK...	0.0	[3..436]	[77..519]
gi\|56420159, gi\|... - gi\|56420159\|ref\|YP_147477.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5638000...	0.0	[3..436]	[74..519]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLMDDFSD EYKNESYYVE GTVSKEYIKN KVLTISEVAE VHYIKDLIPK VLIGSTALLI  60
   61 DGLADVFILG TTKANKRNME EPVSEALVRG PRVGFTEVLS DNTSLLRRHC ADENLSLVKL 120
  121 PVGERAKKEL VVAFIKDLAS TELVEEIKNR IQKIDIDSVL ESGYIEQLIE DNYLSPFPQI 180
  181 QNTERPDRVI SALMEGRVAI LLDGTPFVLI APVTFSMLLQ SPEDYYER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [229-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLPGTLLRLL RFMTAFVSLF APALYISFIS FHPGLIPTKL AISILGSREG VPFPALIEAL  60
   61 IMEVAIEVLR EAGLRLPKPI GPAMGIVGGL IIGQAAVEAG IVSPIMVIVV AVTAISSFTI 120
  121 PQYSVGITLR ILRFVAMFCA AIFGLYGVIL FFLLLCSHLV KLKSFGVPYT SPAVPYRFSD 180
  181 WKDFMVRMPL KIMRRRPKIM HTKKTNRKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits