YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263089, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263089, gi|....

Description	E-value	Query Range	Subject Range
gi\|77997295, gi\|... - gi\|78045180\|ref\|YP_360201.1\| NAD-dependent malic enzyme [Carboxydothermus hydrogenoformans Z-2901], ...	0.0	[1..411]	[1..411]
gi\|87161326, gi\|... - gi\|87161326\|ref\|YP_494342.1\| putative NADP-dependent malic enzyme [Staphylococcus aureus subsp. aure... gi\|57284758, gi\|... - gi\|57650572\|ref\|YP_186585.1\| NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aur... gi\|88195510, gi\|... - gi\|88195510\|ref\|YP_500315.1\| NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aur... gi\|150374608, gi... - gi\|151221808\|ref\|YP_001332630.1\| NADP-dependent malic enzyme, malate dehydrogenase [Staphylococcus a... gi\|161509915, gi... - gi\|161509915\|ref\|YP_001575574.1\| malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) [Stap... gi\|87161326\|ref\|... - putative NADP-dependent malic enzyme [Staphylococcus aureus subsp. aureus USA300], putative NADP-dep...	0.0	[1..406]	[1..405]
gi\|227245803, gi... - gi\|227557893\|ref\|ZP_03987940.1\| malate dehydrogenase (oxaloacetate-decarboxylating) [Staphylococcus ... gi\|227851757, gi... - gi\|227899797\|ref\|ZP_04017602.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus TCH60], gi... gi\|251801801, gi... - gi\|251814692\|ref\|ZP_04829165.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus TCH70], gi... gi\|253315125 - gi\|253315125\|ref\|ZP_04838338.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aure... gi\|253732352, gi... - gi\|253732352\|ref\|ZP_04866517.1\| malate dehydrogenase [Staphylococcus aureus subsp. aureus USA300_TCH... gi\|253734515, gi... - gi\|253734515\|ref\|ZP_04868680.1\| malate dehydrogenase (oxaloacetate-decarboxylating) [Staphylococcus ... gi\|255006486 - gi\|255006486\|ref\|ZP_05145087.2\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aure... gi\|82751289, gi\|... - gi\|82751289\|ref\|YP_417030.1\| NAD-dependent malic enzyme [Staphylococcus aureus RF122], gi\|82656820\|e... gi\|150394248, gi... - gi\|90583539\|ref\|ZP_01239294.1\| Malate dehydrogenase (oxaloacetate decarboxylating) [Staphylococcus a... gi\|90430847, gi\|... - gi\|90585460\|ref\|ZP_01241169.1\| Malic enzyme, N-terminal:Malic enzyme, NAD-binding [Staphylococcus au... gi\|25283685 - pir\|\|B89954 hypothetical protein SA1524 [imported] - Staphylococcus aureus (strain N315) gi\|21283374, gi\|... - gi\|21283374\|ref\|NP_646462.1\| hypothetical protein MW1645 [Staphylococcus aureus subsp. aureus MW2], ... gi\|156722154, gi... - gi\|156980019\|ref\|YP_001442278.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aur... gi\|269203339\|ref... - NADP-dependent malic enzyme, putative [Staphylococcus aureus subsp. aureus ED98] gi\|14247474, gi\|... - gi\|15924692\|ref\|NP_372226.1\| malate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus ... gi\|13701497, gi\|... - gi\|15927279\|ref\|NP_374812.1\| hypothetical protein SA1524 [Staphylococcus aureus subsp. aureus N315],... gi\|49242072, gi\|... - gi\|49483943\|ref\|YP_041167.1\| NAD-dependent malic enzyme [Staphylococcus aureus subsp. aureus MRSA252... gi\|49486527, gi\|... - gi\|49486527\|ref\|YP_043748.1\| NAD-dependent malic enzyme [Staphylococcus aureus subsp. aureus MSSA476...	0.0	[1..406]	[1..405]
gi\|68446948, gi\|... - gi\|70726224\|ref\|YP_253138.1\| hypothetical protein SH1223 [Staphylococcus haemolyticus JCSC1435], gi\|...	0.0	[4..406]	[3..405]
gi\|72494889, gi\|... - gi\|73662374\|ref\|YP_301155.1\| NAD-dependent malic enzyme [Staphylococcus saprophyticus subsp. saproph...	0.0	[3..406]	[2..405]
gi\|37526609, gi\|... - gi\|37526609\|ref\|NP_929953.1\| malic enzyme [Photorhabdus luminescens subsp. laumondii TTO1], gi\|36786...	0.0	[2..412]	[3..429]
gi\|50119813, gi\|... - gi\|50119813\|ref\|YP_048980.1\| malic enzyme [Pectobacterium atrosepticum SCRI1043], gi\|49610339\|emb\|CA...	0.0	[2..412]	[3..429]
gi\|22777861, gi\|... - gi\|23099631\|ref\|NP_693097.1\| malate dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|22777861\|dbj...	0.0	[1..406]	[1..406]
gi\|77974595, gi\|... - gi\|77974595\|ref\|ZP_00830134.1\| COG0281: Malic enzyme [Yersinia frederiksenii ATCC 33641], gi\|2387880...	0.0	[2..412]	[3..429]
gi\|57637865, gi\|... - gi\|57867207\|ref\|YP_188838.1\| NADP-dependent malic enzyme, putative [Staphylococcus epidermidis RP62A...	0.0	[1..406]	[1..405]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRDEALK MHKEKQGKIG VYSKVKVQNS TDLSLAYSPG VAEPCLEIYK DESKVYDYTM  60
   61 KGNLVGVISD GTAVLGLGNI GPKAAMPVME GKALLFKSFA EIDAFPICLN TNNPDKIVEV 120
  121 VKLLEPNFGG INLEDIAAPQ CFEIEERLRK SCDIPVFHDD QHGTAIVTIA GLINALKLTN 180
  181 KKIEDVQIVV NGAGAAGIAI VKLLLHMHVK NVILCDTKGI IYEQRPIGMN ALKEEIARIT 240
  241 NIEQKRGTLA EALIDADVFI GVSAADVVDE DMIRSMNHNP IIFALANPTP EIMPNKAKIA 300
  301 GALVVGTGRS DFPNQVNNVL AFPGVFRGAL DVQAKEINEE MKLAAVYAIA ELISEEELHV 360
  361 NYVIPNPFDP RVVPHVAYAV ARAAVETGVS RKNISMSEIK NNLFRLTKEV NILK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1ww8A
Description:	No description for 1ww8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits