YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263086, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263086, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143505, gi\|... - gi\|52143505\|ref\|YP_083324.1\| branched-chain amino acid transport system carrier protein [Bacillus ce...	0.0	[1..450]	[1..450]
gi\|49477434, gi\|... - gi\|49477434\|ref\|YP_036083.1\| branched-chain amino acid transport system carrier protein [Bacillus th...	0.0	[1..442]	[1..442]
gi\|29895523, gi\|... - gi\|30019978\|ref\|NP_831609.1\| branched chain amino acid ABC transporter carrier protein [Bacillus cer...	0.0	[1..442]	[7..448]
gi\|47568309, gi\|... - gi\|47568309\|ref\|ZP_00239011.1\| branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..442]	[1..442]
gi\|42781063, gi\|... - gi\|42781063\|ref\|NP_978310.1\| branched-chain amino acid transport system II carrier protein [Bacillus...	0.0	[1..450]	[1..450]
gi\|75762736, gi\|... - gi\|75762736\|ref\|ZP_00742568.1\| Branched chain amino acid transport system II carrier protein [Bacill...	0.0	[1..434]	[6..438]
gi\|152975342, gi... - gi\|89202735\|ref\|ZP_01181447.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..434]	[21..453]
gi\|89153322, gi\|... - gi\|89208760\|ref\|ZP_01187249.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..434]	[6..438]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKVPTSFI IIIGLMLFAL FFGAGNLIFP PMLGQMAGNN VWIANAGFLV TGVGLPLLAI  60
   61 TAFVFSGESD LQSLASRVHP VFGIVFAIVL YLAIGPFYAI PRSGTVSFEI GIKPFLSNDA 120
  121 GPAALTVFTI LFFIVTCLLS LNPTKLVDIV GKILTPIKLT VIGMLVVVAF IHPIGRIQAP 180
  181 SEVYASDAFF KGFQEGYLTL DALGAFVFGI IIVNAIREKG ATTKKQLMVV CVKATTIAAT 240
  241 LLALIYTALS YMGASSVEKL GHLNNGAEVL AKVSDYYFGS YGAIFLGVMI IVACLITSVG 300
  301 LITACSSFFH KLFPKISYKK LAIILSVFST LVANIGLTQL IKISIPVLIT MYPIAITLIF 360
  361 LTFLHSVFNG RFEVYQGSLI LTFIFSSLDG LKAAGIESEI IHNFFEHFLP LYSVGLGWGF 420
  421 PAIIGGVCGY VVSVLRKKNT LSSSETQLNK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits