YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263081, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263081, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331639, gi\|... - gi\|49480083\|ref\|YP_037208.1\| L-asparaginase [Bacillus thuringiensis serovar konkukian str. 97-27], g... gi\|229125015, gi... - gi\|229125015\|ref\|ZP_04254183.1\| L-asparaginase, type I [Bacillus cereus 95/8201], gi\|228658431\|gb\|EE...	0.0	[1..334]	[1..334]
GATD_PYRAB - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=gatD PE=1... GATD_PYRAB - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus abyssi GN=gatD PE=1 SV=1	0.0	[1..333]	[91..434]
GATD_PYRHO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 124... GATD_PYRHO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus horikoshii GN=gatD PE=3 SV=1	0.0	[1..333]	[91..434]
gi\|30021206, gi\|... - gi\|30021206\|ref\|NP_832837.1\| L-asparaginase [Bacillus cereus ATCC 14579], gi\|29896760\|gb\|AAP10038.1\|...	0.0	[1..334]	[1..334]
gi\|47564253, gi\|... - gi\|47564253\|ref\|ZP_00235298.1\| L-asparaginase I, putative [Bacillus cereus G9241], gi\|47558405\|gb\|EA...	0.0	[1..334]	[1..334]
gi\|52142396, gi\|... - gi\|52142396\|ref\|YP_084433.1\| L-asparaginase [Bacillus cereus E33L], gi\|51975865\|gb\|AAU17415.1\| L-asp...	0.0	[1..334]	[1..334]
GATD_PYRFU - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /... GATD_PYRFU - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus furiosus GN=gatD PE=3 SV=1	0.0	[1..330]	[91..431]
GATD_THEKO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JC... GATD_PYRKO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus kodakaraensis GN=gatD PE=3 SV=1	0.0	[1..333]	[93..436]
gi\|81240934, gi\|... - gi\|82776786\|ref\|YP_403135.1\| cytoplasmic asparaginase I [Shigella dysenteriae Sd197], gi\|81240934\|gb...	0.0	[2..328]	[4..336]
gi\|168770732, gi... - gi\|189360324\|gb\|EDU78743.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4486], gi\|168770732\|re... gi\|187769442, gi... - gi\|187769442\|gb\|EDU33286.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4196], gi\|168774925\|re... gi\|73855392, gi\|... - gi\|74311915\|ref\|YP_310334.1\| cytoplasmic asparaginase I [Shigella sonnei Ss046], gi\|73855392\|gb\|AAZ8... gi\|189000367, gi... - gi\|189000367\|gb\|EDU69353.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4076], gi\|168782191\|re... gi\|168788172, gi... - gi\|189371969\|gb\|EDU90385.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC869], gi\|168788172\|ref... gi\|168801077, gi... - gi\|189376715\|gb\|EDU95131.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC508], gi\|168801077\|ref... gi\|170019886, gi... - gi\|170019886\|ref\|YP_001724840.1\| cytoplasmic asparaginase I [Escherichia coli ATCC 8739], gi\|1697548... ASPG1_ECO57 - L-asparaginase 1 OS=Escherichia coli O157:H7 GN=ansA PE=3 SV=1 gi\|169889259, gi... - gi\|170081424\|ref\|YP_001730744.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. DH... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|170520221, gi... - gi\|170682503\|ref\|YP_001743482.1\| L-asparaginase 1 [Escherichia coli SMS-3-5], gi\|170520221\|gb\|ACB183... gi\|83586064, gi\|... - gi\|83586064\|ref\|ZP_00924702.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157158977, gi... - gi\|75190798\|ref\|ZP_00704065.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|194433483, gi... - gi\|83569626\|ref\|ZP_00921077.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|75236766, gi\|... - gi\|75236766\|ref\|ZP_00720837.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|193065788, gi... - gi\|75256167\|ref\|ZP_00727863.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|188016257, gi... - gi\|188016257\|gb\|EDU54379.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4113], gi\|168749410\|re... gi\|194413433, gi... - gi\|75210252\|ref\|ZP_00710420.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189356163, gi... - gi\|189356163\|gb\|EDU74582.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4401], gi\|168756778\|re... gi\|75227740, gi\|... - gi\|75227740\|ref\|ZP_00714472.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189367424, gi... - gi\|189367424\|gb\|EDU85840.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4501], gi\|168762160\|re... ASPG1_ECOLI, ASG... - L-asparaginase 1 (EC 3.5.1.1) (L-asparaginase I) (L-asparagine amidohydrolase I) (L-ASNase I) - Esch... gi\|218352058, gi... - gi\|218695326\|ref\|YP_002402993.1\| cytoplasmic asparaginase I [Escherichia coli 55989], gi\|218352058\|e... gi\|254793386, gi... - gi\|254793386\|ref\|YP_003078223.1\| cytoplasmic L-asparaginase I [Escherichia coli O157:H7 str. TW14359... gi\|218699667, gi... - gi\|218699667\|ref\|YP_002407296.1\| cytoplasmic asparaginase I [Escherichia coli IAI39], gi\|218369653\|e... gi\|254161825, gi... - gi\|254161825\|ref\|YP_003044933.1\| cytoplasmic asparaginase I [Escherichia coli B str. REL606], gi\|253... gi\|218705265, gi... - gi\|218705265\|ref\|YP_002412784.1\| cytoplasmic asparaginase I [Escherichia coli UMN026], gi\|218432362\|... gi\|254288613, gi... - gi\|254288613\|ref\|YP_003054361.1\| cytoplasmic asparaginase I [Escherichia coli BL21(DE3)], gi\|2539779... gi\|242377488, gi... - gi\|251785215\|ref\|YP_002999519.1\| hypothetical protein B21_01724 [Escherichia coli BL21], gi\|24237748... gi\|238900981, gi... - gi\|238900981\|ref\|YP_002926777.1\| cytoplasmic L-asparaginase I [Escherichia coli BW2952], gi\|23886071... gi\|89108606, gi\|... - gi\|89108606\|ref\|AP_002386.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. W3110]... gi\|13361941, gi\|... - gi\|15831728\|ref\|NP_310501.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|195937454 - gi\|195937454\|ref\|ZP_03082836.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. EC4024] gi\|208724828, gi... - gi\|208810312\|ref\|ZP_03252188.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4206], gi\|20872482... gi\|208731342, gi... - gi\|208816999\|ref\|ZP_03258119.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4045], gi\|20873134... gi\|208820019, gi... - gi\|208820019\|ref\|ZP_03260339.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4042], gi\|20874014... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|209161040, gi... - gi\|209399640\|ref\|YP_002270839.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4115], gi\|2091610... gi\|209912388, gi... - gi\|209919129\|ref\|YP_002293213.1\| cytoplasmic asparaginase I [Escherichia coli SE11], gi\|209912388\|db... gi\|215265055, gi... - gi\|215486983\|ref\|YP_002329414.1\| cytoplasmic asparaginase I [Escherichia coli O127:H6 str. E2348/69]... gi\|217328832, gi... - gi\|217328832\|ref\|ZP_03444913.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. TW14588], gi\|2173181... gi\|124529953, gi... - gi\|124529953\|ref\|ZP_01700765.1\| L-asparaginases, type I [Escherichia coli B], gi\|124499506\|gb\|EAY469...	0.0	[2..328]	[4..336]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLLATG GTIASVEGNE GLAPGLSAEE LLNYFSRSSR NLEIDCKILM NIDSTNMQPE  60
   61 HWKEIANAVF NHYDDYDGFV ITHGTDTLAY TSSALSYMLQ GLRKPVVLTG SQVPISFKKT 120
  121 DAKKNVADAL RFACEDVGGV FIVFDSRVII GTRAVKMRTK SYDAFESVNY PYVAEVNEDE 180
  181 VKYHWKPTSS HNQLSINTNL CTDVFLMKLY PGTKPEIFDC LKDLYKGIII ESFGNGGLPF 240
  241 EGRNLLSKIQ ELTEMGVAVV ITTQCLEEGE DILLYEVGRK VAQHQVILSG DMNTEAIIAK 300
  301 LMWALGKTNK LEEIKKIIEE PLSYDLTIKS DKDW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.154902
Match:	1wlsA
Description:	Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits