YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263054, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263054, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996195, gi\|... - gi\|78044080\|ref\|YP_360183.1\| butyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z-2901], g...	0.0	[3..381]	[1..379]
gi\|19704756, gi\|... - gi\|19715082\|gb\|AAL95617.1\| ACYL-COA dehydrogenase, short-chain specific [Fusobacterium nucleatum sub...	0.0	[3..380]	[1..378]
gi\|89089326, gi\|... - gi\|89095580\|ref\|ZP_01168474.1\| acyl-CoA dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89089326\|gb\|EA...	0.0	[3..381]	[1..379]
gi\|221087039, gi... - gi\|221087039\|ref\|ZP_03556579.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC61], gi... gi\|229331248, gi... - gi\|229497822\|ref\|ZP_04391521.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC52], gi... gi\|56381770, gi\|... - gi\|56421928\|ref\|YP_149246.1\| acyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381770\|d...	0.0	[3..381]	[1..379]
gi\|22778698, gi\|... - gi\|23100465\|ref\|NP_693932.1\| acyl-CoA dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|22778698\|d...	0.0	[3..381]	[1..379]
gi\|228670589, gi... - gi\|229112755\|ref\|ZP_04242287.1\| Acyl-CoA dehydrogenase [Bacillus cereus Rock1-15], gi\|228670589\|gb\|E... gi\|218160858, gi... - gi\|218232901\|ref\|YP_002370118.1\| acyl-CoA dehydrogenase [Bacillus cereus B4264], gi\|218160858\|gb\|ACK... gi\|228722321, gi... - gi\|229051012\|ref\|ZP_04194560.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH676], gi\|228722321\|gb\|EEL7... gi\|228798087, gi... - gi\|228961605\|ref\|ZP_04123214.1\| Acyl-CoA dehydrogenase [Bacillus thuringiensis serovar pakistani str... gi\|229147881, gi... - gi\|229147881\|ref\|ZP_04276222.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228635531\|gb\|... gi\|229130590, gi... - gi\|229130590\|ref\|ZP_04259546.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228652929\|gb\|... gi\|29898933, gi\|... - gi\|30023372\|ref\|NP_835003.1\| Acyl-CoA dehydrogenase, short-chain specific [Bacillus cereus ATCC 1457...	0.0	[3..381]	[1..379]
gi\|134050979, gi... - gi\|88946577\|ref\|ZP_01149652.1\| acyl-CoA dehydrogenase, short-chain specific [Desulfotomaculum reduce...	0.0	[3..381]	[1..380]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSFVETEK QSFIIEQINK LIPKFMEREH QLSELGSFPY ENINDLKDIG YTKLTLPKEF  60
   61 GGSAISLYDF VLFQEKIAEG CGATALSIGW HLGIVKELAE NRSWNDEMFK WFCEEVRSGA 120
  121 LFNRAATEPK TGSPTRGGKP ETIAVQQGEK WIINGRKTFT TMAPVLDYFI ISASMEGREE 180
  181 VGEFVIPRNT LGVSIEETWD SVAMRGTASH DLVLQNVEIE NRFFTDVKGG KVKQKGIGWL 240
  241 LHIPACYLGI AQSARNYAVQ FAGSYKPNSL NHSISLLPNV RRLVGELELE LMQARVFLYQ 300
  301 IAKKYDEAED KLSLQAELAA VKYAVTNAAI SIVDKSMRIV GAKSLSEKNP LHRYYLNVRA 360
  361 GLHNPPMDDA TLSMLADAAF RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1jqiA
Description:	Butyryl-CoA dehydrogenase, C-domain; Butyryl-CoA dehydrogenase, NM domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits