YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263050, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263050, gi|....

Description	E-value	Query Range	Subject Range
gi\|62901834 - gi\|62901834\|gb\|AAY18868.1\| CGI-32 [synthetic construct]	1.0E-56	[1..200]	[38..236]
gi\|109463988, gi... - gi\|62642320\|ref\|XP_342053.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Rattus n...	3.0E-56	[1..200]	[26..224]
ENSPTRT00000005383 - null CUTC - cutC copper transporter homolog (E. coli)	4.0E-56	[1..200]	[27..225]
gi\|109090222 - gi\|109090222\|ref\|XP_001106529.1\| PREDICTED: cutC copper transporter homolog [Macaca mulatta]	7.0E-56	[1..200]	[27..225]
CUTC_MOUSE - Copper homeostasis protein cutC homolog OS=Mus musculus GN=Cutc PE=1 SV=1	3.0E-55	[1..200]	[26..224]
gi\|73998621 - gi\|73998621\|ref\|XP_534987.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Canis fa...	2.0E-54	[1..200]	[27..225]
gi\|52078454, gi\|... - gi\|52078454\|gb\|AAH82474.1\| LOC494647 protein [Xenopus laevis], gi\|148230294\|ref\|NP_001087964.1\| hypo...	2.0E-53	[9..218]	[20..216]
gi\|95767565 - gi\|95767565\|gb\|ABF57316.1\| ribulose-5-phosphate-3-epimerase [Bos taurus]	4.0E-53	[10..216]	[13..206]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEVIATCLE DVKRIERAGG KRIELISSYT EGGLTPSYAF IKKAVEAVQI PIHVMIRPHA  60
   61 KSFTYTEEEI EMMKEDIVVA QKLGVAGVVL GVLNERNEVA EEKLADLLSV VDGINVTYHR 120
  121 AIDDIENPVE AMRTLKKFHK VTHVLTSGGQ GNIVDNIPVL TDMQKISDGQ IQLVVGAGVT 180
  181 KENIKQLLNE TGISQAHVGT AVREGKSCFA EIDLNLVQEL VQIIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1twdA
Description:	Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.41268851081267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: