YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49179809, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49179809, gi|....

Description	E-value	Query Range	Subject Range
gi\|49328988, gi\|... - gi\|49477432\|ref\|YP_036078.1\| IS605 family transposase OrfB [Bacillus thuringiensis serovar konkukian...	6.0E-92	[1..358]	[44..401]
gi\|30261832, gi\|... - gi\|30261832\|ref\|NP_844209.1\| IS605 family transposase OrfB [Bacillus anthracis str. Ames], gi\|302560... gi\|49178593, gi\|... - gi\|49184666\|ref\|YP_027918.1\| IS605 family transposase OrfB [Bacillus anthracis str. Sterne], gi\|4917... gi\|47527073, gi\|... - gi\|47527073\|ref\|YP_018422.1\| IS605 family transposase OrfB [Bacillus anthracis str. 'Ames Ancestor']... gi\|254734686 - gi\|254734686\|ref\|ZP_05192398.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Western Nor... gi\|254723914 - gi\|254723914\|ref\|ZP_05185700.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. A1055] gi\|254683331 - gi\|254683331\|ref\|ZP_05147192.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. CNEVA-9066] gi\|227005362, gi... - gi\|227815394\|ref\|YP_002815403.1\| transposase, IS605 family, OrfB [Bacillus anthracis str. CDC 684], ... gi\|254759875 - gi\|254759875\|ref\|ZP_05211899.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Australia 9... gi\|254755338 - gi\|254755338\|ref\|ZP_05207372.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Vollum]	4.0E-91	[1..358]	[44..403]
gi\|20516193, gi\|... - gi\|20807648\|ref\|NP_622819.1\| hypothetical protein TTE1193 [Thermoanaerobacter tengcongensis MB4], gi... gi\|20807648 - gi\|20807648\|ref\|NP_622819.1\| hypothetical protein TTE1193 [Thermoanaerobacter tengcongensis MB4]	5.0E-68	[9..334]	[112..417]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKISNQEW KDLRTRQLYS RGDKSKKGNL NMRITVDDCG QGWLEIANPL GRTNGKTKSP  60
   61 RIKVPIMIPY RFYHQITNVV MGKQIGVNPK GKPIIEHQKY SVEIIRKQNE FYINITFDET 120
  121 EIGRVLDFKE TPQSDVIAGI DVNPDRIAVS LCTKQGNFKG SKIFYLHNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTFSTNKRAT IIGQIVQQIK TRLLENNVGG IVLEDLKFQQ SHDTDKYSNR NFHQFTYKKM  60
   61 LNSLIRMALR NGFSVKTVNP AYTSVIGKLK YSKNFGISVH EAAAFTIARR GLELQEQLPQ 120
  121 EIILLLKNQI TTKLRILVAS MEESKKNTQK VYKKWLQTIQ TWKEYHNWKL WSILHKTVYM 180
  181 NNQQVVFKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits