YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257627, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257627, gi|....

Description	E-value	Query Range	Subject Range
gi\|229133906, gi... - gi\|229133906\|ref\|ZP_04262729.1\| Nitroreductase [Bacillus cereus BDRD-ST196], gi\|228649607\|gb\|EEL0561... gi\|163940766, gi... - gi\|89207146\|ref\|ZP_01185693.1\| Nitroreductase [Bacillus weihenstephanensis KBAB4], gi\|89154931\|gb\|EA...	2.0E-41	[1..188]	[1..212]
gi\|228825463, gi... - gi\|228934295\|ref\|ZP_04097134.1\| Nitroreductase [Bacillus thuringiensis serovar andalousiensis BGSC 4... gi\|196032437, gi... - gi\|196032437\|ref\|ZP_03099851.1\| nitroreductase family protein [Bacillus cereus W], gi\|195995188\|gb\|E... gi\|49480049, gi\|... - gi\|49480049\|ref\|YP_037122.1\| NAD(P)H nitroreductase [Bacillus thuringiensis serovar konkukian str. 9...	3.0E-41	[1..188]	[1..212]
gi\|29896692, gi\|... - gi\|30021139\|ref\|NP_832770.1\| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579], gi\|29896692\|gb\|AAP... gi\|228637878, gi... - gi\|229145632\|ref\|ZP_04274015.1\| Nitroreductase [Bacillus cereus BDRD-ST24], gi\|228637878\|gb\|EEK94325... gi\|228655222, gi... - gi\|229128363\|ref\|ZP_04257344.1\| Nitroreductase [Bacillus cereus BDRD-Cer4], gi\|228655222\|gb\|EEL11079... gi\|228672973, gi... - gi\|229110489\|ref\|ZP_04240059.1\| Nitroreductase [Bacillus cereus Rock1-15], gi\|228672973\|gb\|EEL28247....	3.0E-41	[1..188]	[1..212]
gi\|52142481, gi\|... - gi\|52142481\|ref\|YP_084348.1\| NAD(P)H nitroreductase [Bacillus cereus E33L], gi\|51975950\|gb\|AAU17500....	4.0E-41	[1..188]	[1..212]
gi\|42782131, gi\|... - gi\|42782131\|ref\|NP_979378.1\| nitroreductase family protein [Bacillus cereus ATCC 10987], gi\|42738055...	4.0E-41	[1..188]	[1..212]
gi\|47568619, gi\|... - gi\|47568619\|ref\|ZP_00239317.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47554715\|gb...	9.0E-41	[1..188]	[1..212]
gi\|56965527, gi\|... - gi\|56965527\|ref\|YP_177260.1\| NAD(P)H nitroreductase [Bacillus clausii KSM-K16], gi\|56911772\|dbj\|BAD6...	1.0E-37	[1..188]	[1..212]
YDGI_BACSU - Putative NAD(P)H nitroreductase YdgI OS=Bacillus subtilis (strain 168) GN=ydgI PE=3 SV=1 gi\|221321919 - gi\|221321919\|ref\|ZP_03603213.1\| hypothetical protein BsubsS_03189 [Bacillus subtilis subsp. subtilis... gi\|221317643 - gi\|221317643\|ref\|ZP_03598937.1\| hypothetical protein BsubsJ_03118 [Bacillus subtilis subsp. subtilis... YDGI_BACSU - Putative NAD(P)H nitroreductase ydgI OS=Bacillus subtilis GN=ydgI PE=3 SV=1 gi\|221312719 - gi\|221312719\|ref\|ZP_03594524.1\| hypothetical protein BsubsN3_03154 [Bacillus subtilis subsp. subtili...	2.0E-37	[4..188]	[1..209]
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	4.0E-37	[8..188]	[1..167]
gi\|46906343, gi\|... - gi\|46906343\|ref\|YP_012732.1\| nitroreductase family protein [Listeria monocytogenes str. 4b F2365], g... gi\|254826274 - gi\|254826274\|ref\|ZP_05231275.1\| nitroreductase family protein [Listeria monocytogenes FSL J1-194] gi\|47019441, gi\|... - gi\|47092239\|ref\|ZP_00230031.1\| nitroreductase family protein [Listeria monocytogenes str. 4b H7858],...	5.0E-37	[7..187]	[5..209]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSVKTNDF NEILTGRRSI RKYDPSVKIS KEEMTEILTE ATLAPLAKFN QSQVETSSAM  60
   61 IALFGDLNNF DNAEEIYGTA VERGFMPAEV KEDQMKKLSA YFSMVTPEVM KDTVLIDGGL 120
  121 VAMQFMLAAR AHGYDTCPIG GFEKDQIAEA FGLDKERYVP VMLISVGKAA DSGYQSVRLP 180
  181 IEKVAEWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: