YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262956, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262956, gi|....

Description	E-value	Query Range	Subject Range
gi\|65320273 - gi\|65320273\|ref\|ZP_00393232.1\| COG1785: Alkaline phosphatase [Bacillus anthracis str. A2012]	679.0	[0..1]	[557..14]
gi\|49481784, gi\|... - gi\|49481784\|ref\|YP_037062.1\| alkaline phosphatase [Bacillus thuringiensis serovar konkukian str. 97-...	670.0	[0..1]	[557..1]
gi\|51975992, gi\|... - gi\|52142523\|ref\|YP_084306.1\| alkaline phosphatase [Bacillus cereus E33L], gi\|51975992\|gb\|AAU17542.1\|...	650.0	[0..16]	[557..16]
gi\|42738018, gi\|... - gi\|42782094\|ref\|NP_979341.1\| alkaline phosphatase [Bacillus cereus ATCC 10987], gi\|42738018\|gb\|AAS41...	638.0	[0..16]	[557..16]
gi\|47568585, gi\|... - gi\|47568585\|ref\|ZP_00239283.1\| alkaline phosphatase [Bacillus cereus G9241], gi\|47554681\|gb\|EAL13034...	637.0	[0..1]	[557..1]
gi\|29896654, gi\|... - gi\|30021101\|ref\|NP_832732.1\| alkaline phosphatase [Bacillus cereus ATCC 14579], gi\|29896654\|gb\|AAP09...	631.0	[0..12]	[557..2]
gi\|52348805, gi\|... - gi\|52786303\|ref\|YP_092132.1\| PhoB [Bacillus licheniformis ATCC 14580], gi\|52348805\|gb\|AAU41439.1\| Ph... gi\|9965580 - gi\|9965580\|gb\|AAG10093.1\|U79570_2 alkaline phosphatase I [Bacillus licheniformis]	628.0	[0..1]	[557..1]
gi\|89206556, gi\|... - gi\|89206556\|ref\|ZP_01185113.1\| Alkaline phosphatase [Bacillus weihenstephanensis KBAB4], gi\|89155556...	619.0	[0..1]	[557..1]
gi\|19918481, gi\|... - gi\|20093141\|ref\|NP_619216.1\| alkaline phosphatase [Methanosarcina acetivorans C2A], gi\|19918481\|gb\|A...	571.0	[0..24]	[554..35]
gi\|21226674, gi\|... - gi\|21226674\|ref\|NP_632596.1\| alkaline phosphatase [Methanosarcina mazei Go1], gi\|20904958\|gb\|AAM3026...	560.0	[0..38]	[553..54]

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Predicted Domain #1

Region A:
Residues: [1-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELALKMKR LLLVGTIILS MLCTESLMNY HTAEAKVKKV ERKPKNVIIM VMDGTSSTAT  60
   61 TLARLYKGKP LALDEIVTGG VRTYSAESAI TDSAPAATAL ATGNKSNSGY VGVLPSIVSS 120
  121 SGLKPMKEED KLRPVANVLE GAKRTGRATG IVATAEIQHA TPAGFSAHHV NRNNFEVLAE 180
  181 QQVYQNIDVV LGGGKAALLP ETDSGIRKDG EDLVKVIKNK GYDFVETKEA LLGSKSNKIW 240
  241 GSFSLNALAF DMDREATNPE QPTLSQMTEK AIQTLSKDKD GFFLFVEGSK PDWAAHVNDP 300
  301 IGMISDVLAF DNAVAEALKF AKKDGNTMLI AVADHGNSGI SIGNMNTTKG YNTTPISAYI 360
  361 YPLKKAKMTL EGTINNLKAD ISNVEEVAKL YGLDNLTYDE KERLKTAKKK IDVGPIFTTL 420
  421 LSKRANIGFT TGGHTGEDVF LYSYGPQKPY GLIQNTDVAK TMAKAMGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	138.0
Match:	1zebA
Description:	X-ray structure of alkaline phosphatase from human placenta in complex with 5'-AMP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [469-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEKVTNKLF VESESAIKQN DAAVTIDKTD VANPVLIVKR NNVTAQLFVN KNIIRIKNKE  60
   61 YELGSVVVES NGKVYVPEEA IHLFRKHSR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	1d6uA
Description:	Copper amine oxidase, domain 3 (catalytic); Copper amine oxidase, domains 1 and 2; Copper amine oxidase, domain N
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits