YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257584, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257584, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331123, gi\|... - gi\|49479567\|ref\|YP_037057.1\| M20 family peptidase [Bacillus thuringiensis serovar konkukian str. 97-...	0.0	[1..546]	[1..546]
gi\|47570652, gi\|... - gi\|47570652\|ref\|ZP_00241260.1\| arginine utilization protein RocB, putative [Bacillus cereus G9241], ...	0.0	[1..546]	[1..546]
gi\|42782088, gi\|... - gi\|42782088\|ref\|NP_979335.1\| RocB protein [Bacillus cereus ATCC 10987], gi\|42738012\|gb\|AAS41943.1\| R...	3.0E-99	[1..546]	[1..546]
gi\|52142528, gi\|... - gi\|52142528\|ref\|YP_084301.1\| M20 family peptidase [Bacillus cereus E33L], gi\|51975997\|gb\|AAU17547.1\|...	5.0E-99	[1..546]	[1..546]
gi\|30021093, gi\|... - gi\|30021093\|ref\|NP_832724.1\| M20 family peptidase [Bacillus cereus ATCC 14579], gi\|29896646\|gb\|AAP09... gi\|228655179, gi... - gi\|229128320\|ref\|ZP_04257301.1\| hypothetical protein bcere0015_27650 [Bacillus cereus BDRD-Cer4], gi...	2.0E-98	[1..545]	[1..545]
gi\|89206529, gi\|... - gi\|89206529\|ref\|ZP_01185086.1\| Peptidase M20 [Bacillus weihenstephanensis KBAB4], gi\|89155529\|gb\|EAR...	1.0E-97	[1..545]	[1..545]
gi\|89148428, gi\|... - gi\|89203585\|ref\|ZP_01182215.1\| Peptidase M20 [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89148...	1.0E-87	[1..546]	[1..546]
gi\|2634816, gi\|1... - gi\|2634816\|emb\|CAB14313.1\| yqjN [Bacillus subtilis subsp. subtilis str. 168], gi\|16079438\|ref\|NP_390... YQJN_BACSU - Uncharacterized protein yqjN OS=Bacillus subtilis GN=yqjN PE=4 SV=1	2.0E-75	[3..539]	[2..535]
gi\|23098811, gi\|... - gi\|23098811\|ref\|NP_692277.1\| amino acid degradation [Oceanobacillus iheyensis HTE831], gi\|22777038\|d...	5.0E-72	[3..534]	[5..529]
gi\|15893658, gi\|... - gi\|15893658\|ref\|NP_347007.1\| arginine degradation protein (gene rocB) [Clostridium acetobutylicum AT... gi\|25338464 - pir\|\|H96944 arginine degradation protein (gene rocB) [imported] - Clostridium acetobutylicum	1.0E-70	[1..538]	[1..549]

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Predicted Domain #1

Region A:
Residues: [1-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKWQSKEQL IQLVSGLVEI PSITGTEAEV ILPDFVVEQL SDLQYFKENP HHLQKNPTGD  60
   61 GRYFVTALVK KSDSTKNTVI LVSHFDVVDV QDYGVWKEDA FNPKKLTSMF YSHKDELPAH 120
  121 VREDIEQGDW LFGRGTMDMK CGLALQMAMI EQACEGRFDG NVLLLAVPDE EVNSVGMRAA 180
  181 VPRLLDLARE HDLDYKTVLN SEPMFSRHPG DQKKYIYTGS IGKVLPGFLC YGKETHVGEP 240
  241 FAGLNGSYMA SLITAELELN TDLCDIVEGE ASPPPTNLLQ RDLKEDYSVQ IPHRAVTLFN 300
  301 LFLLEKSMTD VVSLLRQKVT KVAEKIEESY EKQAYRFSKY NPFIPPNLKV NVLTYEELIA 360
  361 YAIEQHGQEK IDDIQSSIIK NREDKDDRAV TIDLVDKLAI LCKEKAPMIV LFFAPPYYPA 420
  421 VSSRNNKLIK EVVGEMERYA HFNHNITFEN QNYFGGISDL SYVGLQNPLH SMSSLVDNMP 480
  481 LWDKGYSIPL QELEEFDVPV LNMGPVGKDA HQWTERLDVN YAFETLLDML PICIEKLLVS 540
  541 NKITQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	2qyvA
Description:	No description for 2qyvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits