YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262911, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262911, gi|....

Description	E-value	Query Range	Subject Range
AROA_BACCZ - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=aroA PE=3 SV=1	0.0	[1..429]	[1..429]
AROA_BACHK - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-2... AROA_BACHK - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=aroA PE=3...	0.0	[1..429]	[1..429]
AROA_BACC1 - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=aro...	0.0	[1..429]	[1..429]
gi\|89208081, gi\|... - gi\|89208081\|ref\|ZP_01186603.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus weihenstephane...	0.0	[1..429]	[1..429]
AROA_BACC4 - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus cereus (strain B4264) GN=aroA PE=3 SV=1 gi\|206971830, gi... - gi\|206971830\|ref\|ZP_03232779.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus cereus AH1134... AROA_BACCR - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 21...	0.0	[1..429]	[1..429]
AROA_THEP3 - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 332... AROA_THEPX - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=aroA PE=3 SV... gi\|241904062, gi... - gi\|241904062\|ref\|ZP_04788773.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Thermoanaerobacter bro... gi\|242258288, gi... - gi\|242258288\|ref\|ZP_04803108.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Thermoanaerobacter sp....	0.0	[1..427]	[1..423]
gi\|75761039, gi\|... - gi\|75761039\|ref\|ZP_00741040.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus thuringiensis ...	0.0	[2..429]	[5..432]
gi\|84388492, gi\|... - gi\|84388492\|ref\|ZP_00991039.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio splendidus 12B01...	0.0	[1..429]	[1..426]
AROA_BACCN - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 ...	0.0	[7..427]	[4..424]
AROA_CALS4 - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (... AROA_THETN - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermoanaerobacter tengcongensis GN=aroA PE=3 SV=1	0.0	[7..427]	[5..423]

Back

Predicted Domain #1

Region A:
Residues: [1-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERTIQPVN NGLNGNITIP GDKSISHRAV MFGAIAEGTT TIKGFLPGAD CLSTISCFKE  60
   61 MGVDIVQNGD EVTVVGKGLE GLQEPKAVLD VGNSGTTIRL MSGILANTPF LSCVQGDTSI 120
  121 AKRPMKRVTN PLKQMGANID GREEGTFTPL TIRGGDLKAI EYTSPVASAQ VKSAILLAGL 180
  181 RAEGVTAVTE PHISRDHTER MLEAFGVKVT REGKTVKLAG GQKLTATDVQ VPGDVSSAAF 240
  241 FLVAGAIIPN SKLVLENVGM NPTRTGIIDV LEKMGATFTV EPINEGASEP AANITIETSS 300
  301 LKGIEIGGDI IPRLIDEIPV IALAATQAEG ITVIKDAHEL KVKETNRIDT VVAELTKLGA 360
  361 RIEATDDRMI IYGKSALKGN TVNSYGDHRI GMMLAIAGCI AEGKTIIEDA EAVGVSYPTF 420
  421 FEELQKLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	1rf4A
Description:	Structural Studies of Streptococcus pneumoniae EPSP Synthase, Tetrahedral intermediate Bound State
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-phosphoshikimate 1-carboxyvinyltransferase activity	4.6363282422962	bayes_pls_golite062009
UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity	3.87711259634234	bayes_pls_golite062009
catalytic activity	2.91733519293428	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	2.15049036934665	bayes_pls_golite062009
transferase activity	1.9014276549152	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: