YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257484, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257484, gi|....

Description	E-value	Query Range	Subject Range
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	1.0E-97	[3..316]	[11..319]
gi\|13472783, gi\|... - gi\|14023530\|dbj\|BAB50136.1\| nucleoside hydrolase [Mesorhizobium loti MAFF303099], gi\|13472783\|ref\|NP...	3.0E-97	[5..317]	[4..312]
gi\|83846473, gi\|... - gi\|83942380\|ref\|ZP_00954841.1\| inosine-uridine preferring nucleoside hydrolase [Sulfitobacter sp. EE...	1.0E-96	[3..317]	[1..312]
RIHA_ECO45 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN... RIHA_ECOK1 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O1:K1 / APEC GN=rihA PE=3 SV=1 gi\|227838462, gi... - gi\|227884376\|ref\|ZP_04002181.1\| ribosylpyrimidine nucleosidase [Escherichia coli 83972], gi\|22783846... RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70... gi\|162138473 - gi\|162138473\|ref\|YP_539678.2\| ribonucleoside hydrolase 1 [Escherichia coli UTI89] RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Escherichia coli O6 GN=rihA PE=3 SV=2	1.0E-96	[4..316]	[1..308]
RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB... RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi A GN=rihA PE=3 SV=1 RIHA_SALPK - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=ri...	1.0E-96	[4..315]	[1..307]
gi\|84660196, gi\|... - gi\|84660232\|emb\|CAF05956.1\| inosine-uridine preferring nucleoside hydrolase [Leishmania donovani], g...	2.0E-96	[4..321]	[1..313]
gi\|84660240, gi\|... - gi\|84660240\|emb\|CAF05960.1\| inosine-uridine preferring nucleoside hydrolase [Leishmania infantum], g... gi\|146084247 - gi\|146084247\|ref\|XP_001464969.1\| nonspecific nucleoside hydrolase [Leishmania infantum JPCM5]	3.0E-96	[4..321]	[1..313]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVNKKIIF FGDFGIDDAV ALIYANKTCK LDILGIVAEY GNVSREIVTE NVYFLERYYA  60
   61 TEVKIIEGAA RPMTAEEPLF FPEIHGEHGL GPIIPPDLRI CKRENFCELI KLIEPCPEDI 120
  121 IIVATGRLTT LATLFLLYPN VMDKVCSYYI MGGAFLFPGN VTPVSEANFY GDPIAANIVM 180
  181 KYAKNAHIYP LNVTQEALIT PEMVDIINKE GTGQAKLIKP MIDFYYENFY KKEYPGIAGS 240
  241 PIHDLLPFIS FINDDIFEYK KSAVWISTTN DVTRGQSVAD FRKIAEPTRF DDRPVQKIAV 300
  301 GFNYPAFKEE FMRTILKPDC P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.69897
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits