YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49179606, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49179606, gi|....

Description	E-value	Query Range	Subject Range
gi\|47528161, gi\|... - gi\|47528161\|ref\|YP_019510.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase... gi\|30257463, gi\|... - gi\|30262830\|ref\|NP_845207.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase... gi\|21400763, gi\|... - gi\|65320157\|ref\|ZP_00393116.1\| COG0775: Nucleoside phosphorylase [Bacillus anthracis str. A2012], re... gi\|229220842 - gi\|229220842\|ref\|YP_028931.2\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidas...	2.0E-78	[18..476]	[1..459]
gi\|42737877, gi\|... - gi\|42781953\|ref\|NP_979200.1\| bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase...	4.0E-78	[18..475]	[1..458]
gi\|90326543, gi\|... - gi\|90412506\|ref\|ZP_01220509.1\| purine nucleoside phosphorylase [Photobacterium profundum 3TCK], gi\|9... DEOD1_PHOPR - Purine nucleoside phosphorylase DeoD-type 1 OS=Photobacterium profundum (strain SS9) GN=deoD1 PE=3 S... DEOD1_PHOPR - Purine nucleoside phosphorylase DeoD-type 1 OS=Photobacterium profundum GN=deoD1 PE=3 SV=1	7.0E-43	[8..235]	[3..228]
DEOD_THETN - Purine nucleoside phosphorylase deoD-type OS=Thermoanaerobacter tengcongensis GN=deoD PE=3 SV=1 DEOD_CALS4 - Purine nucleoside phosphorylase DeoD-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...	8.0E-43	[7..232]	[1..224]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	9.0E-43	[8..235]	[3..228]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	1.0E-42	[8..235]	[3..228]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	1.0E-42	[8..235]	[3..228]
DEOD_YERPB - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) ... DEOD_YERP3 - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... DEOD_YERPY - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)... DEOD_YERPS - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... DEOD_YERPS - Purine nucleoside phosphorylase deoD-type OS=Yersinia pseudotuberculosis GN=deoD PE=3 SV=1	1.0E-42	[8..235]	[3..228]
gi\|77977211 - gi\|77977211\|ref\|ZP_00832666.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia intermedia ATCC 29...	1.0E-42	[8..235]	[3..228]
DEOD_YERPE - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis GN=deoD PE=3 SV=1 gi\|167470356 - gi\|167470356\|ref\|ZP_02335060.1\| purine nucleoside phosphorylase [Yersinia pestis FV-1] DEOD_YERPG - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Angola) GN=deoD PE=... gi\|115346250, gi... - gi\|218927639\|ref\|YP_002345514.1\| purine nucleoside phosphorylase [Yersinia pestis CO92], gi\|16120771... gi\|165927348, gi... - gi\|165927348\|ref\|ZP_02223180.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|166008763, gi... - gi\|166008763\|ref\|ZP_02229661.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166206924, gi... - gi\|166212178\|ref\|ZP_02238213.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|167400482, gi... - gi\|167400482\|ref\|ZP_02305991.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166963063, gi... - gi\|167419069\|ref\|ZP_02310822.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|167054958, gi... - gi\|167426035\|ref\|ZP_02317788.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Mediaevalis ... DEOD_YERPA - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=deoD PE... DEOD_YERPN - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=deoD P... gi\|229842403, gi... - gi\|229842403\|ref\|ZP_04462558.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|229840324, gi... - gi\|229840324\|ref\|ZP_04460483.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|150260522, gi... - gi\|150260522\|ref\|ZP_01917250.1\| purine nucleoside phosphorylase [Yersinia pestis CA88-4125], gi\|1492... gi\|229705922, gi... - gi\|229836979\|ref\|ZP_04457144.1\| purine-nucleoside phosphorylase [Yersinia pestis Pestoides A], gi\|22... DEOD_YERPP - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis (strain Pestoides F) GN=deoD PE=3 SV=1 gi\|165915653, gi... - gi\|89104403\|ref\|ZP_01176947.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia pestis biovar Orie...	2.0E-42	[8..235]	[3..228]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYIVYWQIY KKREITFMNR IGIIGAMQIE IDLLLEKLIM QEEQIIAGMP FYVGEFMGTE  60
   61 VIVTRCGVGK VNAAACTQTL IHKFDVDAII NTGVAGGLHP DVKVGDIVIS TNVTHHDVSK 120
  121 TQMKNLFPFQ EEFIASKELV ELARKACNSS SLHMEIHEGR IVSGECFVED SKLKAKLIDE 180
  181 YAPHCTEMEG AAIGHVAYIN EVPFLVIRCI SDSADDEAQI SYDDFAKTAA NYCSEIIVEM 240
  241 LKTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1z5oA
Description:	Crystal structure of MTA/AdoHcy nucleosidase Asp197Asn mutant complexed with 5'-methylthioadenosine
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [245-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKTYSSKGE NEMLQALIFD MDGTLFQTDK ILELSLDDTF DHLRSLQLWD TVTPIDKYRE  60
   61 IMGVPLPKVW EALLPDHSLE IREQTDAYFL ERLIENIKSG KGALYPNVKE IFTYIKENNC 120
  121 SIYIASNGLT EYLRAIVSYY DLDQWVTETF SIEQINSLNK SDLVKSILNK YDIKEAAVVG 180
  181 DRLSDINAAK DNGLIAIGCN FDFAQEDELA QADIVIDDLL ELKEILSTVQ RL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
acireductone synthase activity	1.0792238840027	bayes_pls_golite062009
binding	0.233635972454928	bayes_pls_golite062009
hydrolase activity	0.00894278425344301	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: