YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262804, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262804, gi|....

Description	E-value	Query Range	Subject Range
gi\|229091841, gi... - gi\|229091841\|ref\|ZP_04223034.1\| Sarcosine oxidase, beta subunit [Bacillus cereus Rock3-42], gi\|22869... gi\|52142680, gi\|... - gi\|52142680\|ref\|YP_084149.1\| sarcosine oxidase, beta subunit [Bacillus cereus E33L], gi\|51976149\|gb\|...	5.0E-62	[1..391]	[1..391]
gi\|163862781, gi... - gi\|89208281\|ref\|ZP_01186796.1\| FAD dependent oxidoreductase [Bacillus weihenstephanensis KBAB4], gi\|...	2.0E-61	[1..391]	[1..391]
gi\|225789680, gi... - gi\|225864809\|ref\|YP_002750187.1\| putative glycine oxidase [Bacillus cereus 03BB102], gi\|225789680\|gb... gi\|49330656, gi\|... - gi\|49479100\|ref\|YP_036920.1\| sarcosine oxidase, beta subunit [Bacillus thuringiensis serovar konkuki... gi\|196027141, gi... - gi\|196042007\|ref\|ZP_03109293.1\| putative glycine oxidase [Bacillus cereus NVH0597-99], gi\|196027141\|...	2.0E-61	[1..391]	[1..391]
gi\|30020955, gi\|... - gi\|30020955\|ref\|NP_832586.1\| sarcosine oxidase beta subunit [Bacillus cereus ATCC 14579], gi\|2989650...	5.0E-61	[1..389]	[1..389]
gi\|47555627, gi\|... - gi\|47567650\|ref\|ZP_00238360.1\| oxidoreductase, FAD-binding, putative [Bacillus cereus G9241], gi\|475...	3.0E-60	[1..391]	[1..391]
gi\|65318156, gi\|... - gi\|65318156\|ref\|ZP_00391115.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Bacillus anthra... gi\|190560101, gi... - gi\|190568864\|ref\|ZP_03021767.1\| glycine oxidase ThiO [Bacillus anthracis Tsiankovskii-I], gi\|1905601... gi\|254757122 - gi\|254757122\|ref\|ZP_05209150.1\| glycine oxidase ThiO [Bacillus anthracis str. Australia 94] gi\|172080561, gi... - gi\|177654747\|ref\|ZP_02936535.1\| glycine oxidase ThiO [Bacillus anthracis str. A0174], gi\|172080561\|g... gi\|49177647, gi\|... - gi\|49183720\|ref\|YP_026972.1\| glycine oxidase [Bacillus anthracis str. Sterne], gi\|49177647\|gb\|AAT530... gi\|47526014, gi\|... - gi\|47526014\|ref\|YP_017363.1\| glycine oxidase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501162\|... gi\|30260878, gi\|... - gi\|30260878\|ref\|NP_843255.1\| glycine oxidase [Bacillus anthracis str. Ames], gi\|30254327\|gb\|AAP24741... gi\|167635997, gi... - gi\|167635997\|ref\|ZP_02394304.1\| glycine oxidase ThiO [Bacillus anthracis str. A0442], gi\|167528669\|g... gi\|164711780, gi... - gi\|165872455\|ref\|ZP_02217089.1\| glycine oxidase ThiO [Bacillus anthracis str. A0488], gi\|164711780\|g... gi\|170666914, gi... - gi\|170689166\|ref\|ZP_02880364.1\| glycine oxidase ThiO [Bacillus anthracis str. A0465], gi\|170666914\|g... gi\|167510691, gi... - gi\|167641300\|ref\|ZP_02399552.1\| glycine oxidase ThiO [Bacillus anthracis str. A0193], gi\|167510691\|g... gi\|227006963, gi... - gi\|227816398\|ref\|YP_002816407.1\| glycine oxidase ThiO [Bacillus anthracis str. CDC 684], gi\|22700696... gi\|229268875, gi... - gi\|229604467\|ref\|YP_002865325.1\| glycine oxidase ThiO [Bacillus anthracis str. A0248], gi\|229268875\|... gi\|254683069 - gi\|254683069\|ref\|ZP_05146930.1\| glycine oxidase ThiO [Bacillus anthracis str. CNEVA-9066] gi\|254725856 - gi\|254725856\|ref\|ZP_05187638.1\| glycine oxidase ThiO [Bacillus anthracis str. A1055] gi\|254735039 - gi\|254735039\|ref\|ZP_05192750.1\| glycine oxidase ThiO [Bacillus anthracis str. Western North America ... gi\|254739869 - gi\|254739869\|ref\|ZP_05197561.1\| glycine oxidase ThiO [Bacillus anthracis str. Kruger B] gi\|254753208 - gi\|254753208\|ref\|ZP_05205244.1\| glycine oxidase ThiO [Bacillus anthracis str. Vollum]	7.0E-59	[2..379]	[3..364]
gi\|42779877, gi\|... - gi\|42779877\|ref\|NP_977124.1\| glycine oxidase [Bacillus cereus ATCC 10987], gi\|42735794\|gb\|AAS39732.1...	1.0E-58	[2..379]	[3..364]

Back

Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHCDVLIIG GGIIGCSIAY YTSKYGRDVT IIEKGEFVSG TSSRCDGNIL AIDKDPRFDS  60
   61 QMSLVSQKLV TDLSEELEHS FEYRAPGSIL VCESDEEMEA AQQWVNRQKE AGLPFRMLDR 120
  121 QDIRAESPFF ADDLLGGLEC ATDSTVNPYL LAFSLLAESK KYGTKAFNHT EVKEMKRDKD 180
  181 GSFIVETTNK TFTAKQVVNA AGVWAPKIGQ MLDVNIPIEP RKGHIIVASR QQHVGCRKVM 240
  241 EFGYLISKFG GKRKVDALTE KYGVALVFEP TESQNFLIGS SREFVGFHTK INNEVIKCIA 300
  301 NRAIRFYPKM ADMMVIRSYA GLRPWTEDHL PIISRVEHIP NYFIAAGHEG DGISLAAVTG 360
  361 KVIEELLNEK ETIIPIEPLR LSRFTERVLN G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.30103
Match:	1y56B
Description:	Crystal structure of L-proline dehydrogenase from P.horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits