YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262803, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262803, gi|....

Description	E-value	Query Range	Subject Range
gi\|163940583, gi... - gi\|89208256\|ref\|ZP_01186771.1\| Proline racemase [Bacillus weihenstephanensis KBAB4], gi\|89153789\|gb\|...	3.0E-91	[1..345]	[1..345]
gi\|51976151, gi\|... - gi\|52142682\|ref\|YP_084148.1\| proline racemase [Bacillus cereus E33L], gi\|51976151\|gb\|AAU17701.1\| pro...	5.0E-91	[1..345]	[1..345]
gi\|49328328, gi\|... - gi\|49476772\|ref\|YP_036919.1\| proline racemase [Bacillus thuringiensis serovar konkukian str. 97-27],...	9.0E-91	[1..345]	[1..345]
gi\|21400730, gi\|... - gi\|65320126\|ref\|ZP_00393085.1\| COG3938: Proline racemase [Bacillus anthracis str. A2012], ref\|NP_656...	5.0E-90	[1..345]	[1..345]
gi\|30020954, gi\|... - gi\|30020954\|ref\|NP_832585.1\| proline racemase [Bacillus cereus ATCC 14579], gi\|29896507\|gb\|AAP09786....	5.0E-90	[1..345]	[1..345]
HYPRE_BRUME - 4-hydroxyproline epimerase OS=Brucella melitensis GN=BMEI0257 PE=1 SV=1 4HYPE_BRUME - 4-hydroxyproline epimerase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G...	3.0E-83	[5..331]	[4..330]
gi\|254714635 - gi\|254714635\|ref\|ZP_05176446.1\| hydroxyproline-2-epimerase [Brucella ceti M644/93/1] gi\|254717533 - gi\|254717533\|ref\|ZP_05179344.1\| hydroxyproline-2-epimerase [Brucella ceti M13/05/1] gi\|254703558 - gi\|254703558\|ref\|ZP_05165386.1\| hydroxyproline-2-epimerase [Brucella suis bv. 3 str. 686] gi\|254708793 - gi\|254708793\|ref\|ZP_05170604.1\| hydroxyproline-2-epimerase [Brucella pinnipedialis B2/94] gi\|254719780 - gi\|254719780\|ref\|ZP_05181591.1\| hydroxyproline-2-epimerase [Brucella sp. 83/13] 4HYPE_BRUO2 - 4-hydroxyproline epimerase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=BOV_1726 PE... HYPRE_BRUSU - 4-hydroxyproline epimerase OS=Brucella suis GN=BR1792 PE=1 SV=1 4HYPE_BRUSU - 4-hydroxyproline 2-epimerase OS=Brucella suis biovar 1 (strain 1330) GN=BR1792 PE=1 SV=1 4HYPE_BRUC2 - 4-hydroxyproline epimerase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_A1830 PE=3 SV=... gi\|225616195, gi... - gi\|225628349\|ref\|ZP_03786383.1\| Proline racemase A precursor [Brucella ceti str. Cudo], gi\|225616195...	5.0E-83	[5..333]	[4..332]
4HYPE_BRUAB - 4-hydroxyproline epimerase OS=Brucella abortus biovar 1 (strain 9-941) GN=BruAb1_1773 PE=1 SV=1 4HYPE_BRUA2 - 4-hydroxyproline epimerase OS=Brucella abortus (strain 2308) GN=prpA PE=1 SV=1 HYPRE_BRUAB - 4-hydroxyproline epimerase OS=Brucella abortus GN=BruAb1_1773 PE=1 SV=1 gi\|254694438 - gi\|254694438\|ref\|ZP_05156266.1\| hydroxyproline-2-epimerase [Brucella abortus bv. 3 str. Tulya] gi\|254698097 - gi\|254698097\|ref\|ZP_05159925.1\| hydroxyproline-2-epimerase [Brucella abortus bv. 2 str. 86/8/59] gi\|237816159, gi... - gi\|237816159\|ref\|ZP_04595154.1\| Proline racemase A precursor [Brucella abortus str. 2308 A], gi\|2377... gi\|254689946 - gi\|254689946\|ref\|ZP_05153200.1\| hydroxyproline-2-epimerase [Brucella abortus bv. 6 str. 870] 4HYPE_BRUA1 - 4-hydroxyproline epimerase OS=Brucella abortus (strain S19) GN=BAbS19_I16820 PE=3 SV=1 gi\|254730981 - gi\|254730981\|ref\|ZP_05189559.1\| hydroxyproline-2-epimerase [Brucella abortus bv. 4 str. 292] gi\|154434614 - gi\|154434614\|gb\|ABS82396.1\| hydroxyproline-2-epimerase [Brucella abortus bv. 1]	2.0E-82	[5..331]	[4..330]
4HYPE_RHIME - Probable 4-hydroxyproline 2-epimerase OS=Rhizobium meliloti (strain 1021) GN=RB0258 PE=2 SV=1 gi\|25369461 - pir\|\|B95874 probable proline racemase protein [imported] - Sinorhizobium meliloti (strain 1021) maga...	5.0E-82	[4..334]	[3..333]
gi\|13473394, gi\|... - gi\|14024143\|dbj\|BAB50747.1\| proline racemase [Mesorhizobium loti MAFF303099], gi\|13473394\|ref\|NP_104...	9.0E-82	[4..334]	[3..333]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTQKVFTTI DTHTGGNPTR TLISGLPKLL GETMAEKMLH MKKEYDWIRK LLMNEPRGHD  60
   61 VMSGALLTDP CHPDADIGVI YIETGGYLPM CGHDTIGVCT ALIESGLIPV VEPITSLKLD 120
  121 TPAGLVEVDI FVRDGKAKEV SFCNIPAFIL KHITVDVENI GTVEADIAYG GNFYAIIDAK 180
  181 SVGLELVPEH ASTIIDKAIH IRNIINERFE IIHPEYSFIR GLTHVEFYTD PTHESAHVKN 240
  241 TVVVPPGGID RSPCGTGTSA KLAVLYANQK IEMNEEFVHE SIVGSLFKGC VINTTNVANM 300
  301 EAVVTKITGS AWLMGMHRFF YNEKDPLKEG FLLIPPMEHE TEDVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.154902
Match:	1w61A
Description:	proline racemase in complex with 2 molecules of pyrrole-2-carboxylic acid (holo form)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits