YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257432, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	496 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257432, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737840, gi\|... - gi\|42781916\|ref\|NP_979163.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	2.0E-72	[1..496]	[1..496]
gi\|51978142, gi\|... - gi\|52144673\|ref\|YP_082155.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	7.0E-72	[1..481]	[1..482]
gi\|49480224, gi\|... - gi\|49480224\|ref\|YP_034896.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	9.0E-72	[1..481]	[1..482]
gi\|47567645, gi\|... - gi\|47567645\|ref\|ZP_00238355.1\| sodium:alanine symporter family protein [Bacillus cereus G9241], gi\|4...	2.0E-71	[1..496]	[1..496]
gi\|228860354, gi... - gi\|228899323\|ref\|ZP_04063586.1\| sodium/alanine symporter [Bacillus thuringiensis IBL 4222], gi\|22886... gi\|74493121, gi\|... - gi\|75759409\|ref\|ZP_00739504.1\| Sodium/proton-dependent alanine carrier protein [Bacillus thuringiens...	3.0E-71	[1..481]	[2..483]
gi\|165872964, gi... - gi\|165872964\|ref\|ZP_02217587.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A04... gi\|170708468, gi... - gi\|170708468\|ref\|ZP_02898910.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A03... gi\|227816492, gi... - gi\|227816492\|ref\|YP_002816501.1\| sodium/alanine symporter family protein [Bacillus anthracis str. CD... gi\|167640904, gi... - gi\|167640904\|ref\|ZP_02399162.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A01... gi\|229603503, gi... - gi\|229603503\|ref\|YP_002865236.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A0... gi\|190560343, gi... - gi\|190568549\|ref\|ZP_03021455.1\| sodium/alanine symporter family protein [Bacillus anthracis Tsiankov... gi\|254738749 - gi\|254738749\|ref\|ZP_05196452.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Wes... gi\|177652818, gi... - gi\|177652818\|ref\|ZP_02935191.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A01... gi\|254754975 - gi\|254754975\|ref\|ZP_05207009.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Vol... gi\|254762294 - gi\|254762294\|ref\|ZP_05214138.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Aus... gi\|49177557, gi\|... - gi\|49183630\|ref\|YP_026882.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Sterne... gi\|47551542, gi\|... - gi\|47777837\|ref\|YP_017266.2\| sodium/alanine symporter family protein [Bacillus anthracis str. 'Ames ... gi\|30254241, gi\|... - gi\|30260792\|ref\|NP_843169.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Ames],... gi\|21398597, gi\|... - gi\|65318064\|ref\|ZP_00391023.1\| COG1115: Na+/alanine symporter [Bacillus anthracis str. A2012], ref\|N...	6.0E-71	[1..481]	[1..482]
gi\|29894365, gi\|... - gi\|30018823\|ref\|NP_830454.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1... gi\|229126069, gi... - gi\|229126069\|ref\|ZP_04255091.1\| sodium/alanine symporter [Bacillus cereus BDRD-Cer4], gi\|228657391\|g...	6.0E-71	[2..481]	[3..483]

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Predicted Domain #1

Region A:
Residues: [1-496]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLVEWLVG QVWSIGLVVF ALGAGVYFTI ATRFLQIRYF KEMIKLLFEG KSSETGISSF  60
   61 QAFCLALSGR VGIGNIAGVA TAIAFGGPGA VFWMWVMALL GAASAFVEST LSQIYKSKVE 120
  121 NEYRGGTPYF IEKGLNMKWF AVIVAVVVTL SYGVLLPGIQ SSSIAVGFEN SNGISKYITG 180
  181 ILLVVLLAAI IFGGVKRIAG VSQMLVPFMA IGYVIVTCIV LIANVKEIPS MFALIFSSAF 240
  241 GVNEMFGGIV GAAIAWGVKC AVFSNVAGVG EATYSSAAAE VSHPAKQGLV QAFSVYIDTI 300
  301 VVCTATALMI LITGMYNVIP EGKSAIVKNI GNVDAGPIYT QQAVETVMTG FGPLFISIAI 360
  361 FFFAFTTLLA YYYIAETTLT YLDRELKHSW LKPVLKIGFL IMVYIGSVES ASLLWNLGDL 420
  421 GIGSMAWLNL IAILLLSKIA LKVLKDYETQ KKEGKDPVFD PKNVGIEGLT FWEERSKEVA 480
  481 RKNSKEQAVV DDSLKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits