YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257407, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257407, gi|....

Description	E-value	Query Range	Subject Range
gi\|65320096, gi\|... - gi\|65320096\|ref\|ZP_00393055.1\| COG2333: Predicted hydrolase (metallo-beta-lactamase superfamily) [Ba...	8.0E-96	[1..461]	[1..461]
gi\|51976180, gi\|... - gi\|52142711\|ref\|YP_084119.1\| S-layer protein [Bacillus cereus E33L], gi\|51976180\|gb\|AAU17730.1\| S-la...	1.0E-95	[1..461]	[1..461]
gi\|47552776, gi\|... - gi\|47570554\|ref\|ZP_00241177.1\| competence protein ComEC/Rec2-related protein [Bacillus cereus G9241]...	3.0E-94	[1..461]	[1..461]
gi\|165869452, gi... - gi\|165869452\|ref\|ZP_02214111.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|167513183, gi... - gi\|167638719\|ref\|ZP_02396994.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|167531244, gi... - gi\|167633206\|ref\|ZP_02391531.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|227815361, gi... - gi\|227815361\|ref\|YP_002815370.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis st... gi\|170707331, gi... - gi\|170707331\|ref\|ZP_02897786.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|228845221, gi... - gi\|228914438\|ref\|ZP_04078049.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus thuringiensis... gi\|170686304, gi... - gi\|170686304\|ref\|ZP_02877526.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|228945468, gi... - gi\|228945468\|ref\|ZP_04107820.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus thuringiensis... gi\|229602647, gi... - gi\|229602647\|ref\|YP_002866241.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis st... gi\|190566458, gi... - gi\|190566458\|ref\|ZP_03019376.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis Tsi... gi\|254684420 - gi\|254684420\|ref\|ZP_05148280.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|254723947 - gi\|254723947\|ref\|ZP_05185733.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|254734720 - gi\|254734720\|ref\|ZP_05192432.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|254741127 - gi\|254741127\|ref\|ZP_05198815.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|254755371 - gi\|254755371\|ref\|ZP_05207405.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|254759909 - gi\|254759909\|ref\|ZP_05211933.1\| N-acetylmuramoyl-L-alanine amidase, family 4 [Bacillus anthracis str... gi\|49184697, gi\|... - gi\|49184697\|ref\|YP_027949.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Sterne], gi... gi\|47551674, gi\|... - gi\|47777969\|ref\|YP_018455.2\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. 'Ames Ances... gi\|30261862, gi\|... - gi\|30261862\|ref\|NP_844239.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Ames], gi\|3... gi\|21399697, gi\|... - gi\|65319138\|ref\|ZP_00392097.1\| COG4193: Beta- N-acetylglucosaminidase [Bacillus anthracis str. A2012...	5.0E-47	[1..201]	[1..206]
gi\|42736069, gi\|... - gi\|42780151\|ref\|NP_977398.1\| S-layer-like domain-containing protein [Bacillus cereus ATCC 10987], gi...	4.0E-46	[2..227]	[4..231]
SLAP_BACTF - S-layer protein OS=Bacillus thuringiensis subsp. finitimus GN=ctc PE=1 SV=1 gi\|3805795 - gi\|3805795\|emb\|CAA09981.1\| CTC protein [Bacillus thuringiensis]	3.0E-45	[2..199]	[8..208]
gi\|49328600, gi\|... - gi\|49477044\|ref\|YP_035243.1\| S-layer protein [Bacillus thuringiensis serovar konkukian str. 97-27], ...	3.0E-45	[2..225]	[4..229]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFSLLLTA FVMILTLFIP NLTSAKSFPD VQSNHWAIKE INYLSDKGII NGTPEGTFKP  60
   61 SDYVTRGQMA LMLDLSLKLE KPSNYNHIFS DVAKGVYYYD SVHKLAHNNI VQRETNYFPD 120
  121 RSLTRAEMAV VLVKTFNLKP TGADVNFPDV PSNHWGYNYV KILAQNNITA GFPDGTFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [179-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDVKVTREQF AAFLARVLEP SFRPGLPKPK GELEVHYINV EQGDATFIKS PSGETILIDG  60
   61 GNNGKGKVVA NYLKGLGFQT IDYMIATHPD ADHVGGLDEV LYAINVKNVY APKVSHTTQT 120
  121 FKDFLTAVAN KGLTIKEAKS GVTLPINGLN SQFLAPVKEY GNDLNEWSAV LKVTHGSKSF 180
  181 LFTGDAESKS EKDMVATYGS GLKSDVLKPG HHGSKTSSSQ PFLDAVKPSI AIISAGAGNR 240
  241 YGHPTQETLA KLNAMSVKVY RTDLNGTVII NSDGSNISVR AER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	2ohhA
Description:	No description for 2ohhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits