YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257397, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257397, gi|....

Description	E-value	Query Range	Subject Range
gi\|29896472, gi\|... - gi\|30020919\|ref\|NP_832550.1\| chitin binding protein [Bacillus cereus ATCC 14579], gi\|29896472\|gb\|AAP...	1.0E-82	[1..455]	[1..455]
gi\|47554327, gi\|... - gi\|47569058\|ref\|ZP_00239748.1\| chitin-binding protein, putative [Bacillus cereus G9241], gi\|47554327...	4.0E-82	[1..455]	[1..455]
gi\|76609372 - gi\|76609372\|ref\|XP_592871.2\| PREDICTED: similar to titin isoform N2-B [Bos taurus]	6.0E-82	[9..454]	[1600..2052]
gi\|51976186, gi\|... - gi\|52142717\|ref\|YP_084112.1\| chitin-binding protein [Bacillus cereus E33L], gi\|51976186\|gb\|AAU17736....	7.0E-82	[1..455]	[1..455]
gi\|65320089, gi\|... - gi\|65320089\|ref\|ZP_00393048.1\| COG3979: Uncharacterized protein contain chitin-binding domain type 3...	2.0E-81	[1..455]	[1..455]
gi\|42737805, gi\|... - gi\|42781881\|ref\|NP_979128.1\| chitin binding protein, putative [Bacillus cereus ATCC 10987], gi\|42737...	4.0E-81	[1..455]	[1..455]
gi\|49330677, gi\|... - gi\|49479121\|ref\|YP_036882.1\| chitin-binding protein [Bacillus thuringiensis serovar konkukian str. 9... gi\|251825716 - gi\|251825716\|gb\|ACT20917.1\| Cbp50 [Bacillus thuringiensis serovar konkukian]	8.0E-81	[1..455]	[1..455]
gi\|163862331, gi... - gi\|89205499\|ref\|ZP_01184068.1\| Carbohydrate-binding family V/XII:Fibronectin, type III:Chitin-bindin...	9.0E-81	[1..455]	[1..455]
gi\|109470142 - gi\|109470142\|ref\|XP_001065955.1\| PREDICTED: similar to titin isoform N2-B [Rattus norvegicus]	2.0E-79	[9..454]	[13748..14200]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRLLKQLQ NMKMNKKSLG AVALTAGIIG TTLIPQNTYA HGFVEKPGSR SALCSPTYGA  60
   61 LNVNCGSVMY EPQSLEAPKG FPQGGPVDGQ IASAGGKFGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2bemA
Description:	Crystal structure of the Serratia marcescens chitin-binding protein CBP21
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [101-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILDQQTADRW FKNTITGGEN TFTWKYTAPH LTSKWHYYIT KKGWNPNKAL TRADFEPIGT  60
   61 VQHDGSAASN HLTHKINVPT DRSGYHVILA VWDVADTANA FYNVIDVTLI NDVKPDTEAP 120
  121 SIPNGIQAQK VTANSIELAW TASTDNVGVK GYQIFRNGEM IDTVPGTHFI DKKLQPSTEY 180
  181 SYTVKAIDAA GNASKESAKL TVKTTVEAPD TEAPTQPKGL HSMGTTTSSV DLMWSPSDDN 240
  241 IGVGHYDIYR ETEGSMKKIA TSNTTSYMDK NLLPNTTYKY VVKAVDVAGN ESVQSDIFTI 300
  301 TTKTEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1tdqA
Description:	Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [407-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSYEEWDAKK AYEKGDKVLH EGKVYEAVQS YKGNGDPNWI YALSLWKTV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.08
Match:	1aiwA
Description:	NMR STRUCTURES OF THE CELLULOSE-BINDING DOMAIN OF THE ENDOGLUCANASE Z FROM ERWINIA CHRYSANTHEMI, 23 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits