YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262629, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	422 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262629, gi|....

Description	E-value	Query Range	Subject Range
gi\|49329366, gi\|... - gi\|49477810\|ref\|YP_036752.1\| sporulation kinase B [Bacillus thuringiensis serovar konkukian str. 97-...	7.0E-72	[1..422]	[1..422]
gi\|51976322, gi\|... - gi\|52142853\|ref\|YP_083976.1\| sporulation kinase B [Bacillus cereus E33L], gi\|51976322\|gb\|AAU17872.1\|...	1.0E-70	[1..422]	[1..422]
gi\|42737653, gi\|... - gi\|42781730\|ref\|NP_978977.1\| sporulation kinase B [Bacillus cereus ATCC 10987], gi\|42737653\|gb\|AAS41...	2.0E-70	[1..422]	[1..422]
gi\|47553716, gi\|... - gi\|47569601\|ref\|ZP_00240278.1\| sensor histidine kinase, putative [Bacillus cereus G9241], gi\|4755371...	2.0E-70	[1..422]	[1..422]
gi\|75763238, gi\|... - gi\|75763238\|ref\|ZP_00742996.1\| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 3...	1.0E-68	[1..412]	[1..412]
gi\|65319950 - gi\|65319950\|ref\|ZP_00392909.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str...	1.0E-58	[66..422]	[7..363]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	1.0E-58	[97..418]	[294..639]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	4.0E-57	[97..417]	[180..531]
gi\|88915019, gi\|... - gi\|88938237\|ref\|ZP_01143721.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	1.0E-55	[120..417]	[351..654]
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	2.0E-55	[157..415]	[179..451]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVYINQHV LNNLLYILSS IFIFYFIYDS GRYLKKYKKL LIILCTSIPL ILCMRYPIYM  60
   61 DENCIHDLRQ IPVIIGTLYG GFPVGITLFA ILLITRFSFY GFSMLTIVVY GTMFIITAFA 120
  121 SAKFNTYNRK IKVTYAMFLT FFLAIFTTVI VLTLSDFEV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.05061
Match:	PF07694.3
Description:	No description for PF07694.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNLYIIYFII LPTILMLFVV YFNEVLKDAL CMRSKLIKME KMEIVSQLAA SISHEVRNPL  60
   61 TVVKGFTQLL KTPNLTPESR DEYIKHILEE LHRAQGIIDD YLTFAKPASE KLDEISVEQE 120
  121 LNRVINMILP LCNMNTIHIT KDFSMATIVG NKQHFQQCFL NLIKNGIEAM PNGGTLNISS 180
  181 SISNNKVIIR IEDSGIGMSQ EQVNRFGEPY FNTKTKGTGL GTMVAVKIIE TMQGSLRIRS 240
  241 VVNKGTTLTI TFPKCSQNSS DNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits