YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262595, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262595, gi|....

Description	E-value	Query Range	Subject Range
gi\|75764291, gi\|... - gi\|75764291\|ref\|ZP_00743831.1\| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelens...	1.0E-64	[1..304]	[8..311]
gi\|42737610, gi\|... - gi\|42781687\|ref\|NP_978934.1\| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987], gi\|42737610\|g... gi\|217067100, gi... - gi\|217960060\|ref\|YP_002338618.1\| D-alanine--D-alanine ligase [Bacillus cereus AH187], gi\|217067100\|g...	1.0E-63	[1..304]	[1..304]
gi\|49330756, gi\|... - gi\|49479200\|ref\|YP_036716.1\| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian s...	2.0E-63	[1..304]	[1..304]
gi\|51976353, gi\|... - gi\|52142884\|ref\|YP_083945.1\| D-alanine--D-alanine ligase [Bacillus cereus E33L], gi\|51976353\|gb\|AAU1...	4.0E-63	[1..304]	[1..304]
gi\|228988793, gi... - gi\|228988793\|ref\|ZP_04148866.1\| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigie... gi\|47568737, gi\|... - gi\|47568737\|ref\|ZP_00239433.1\| D-ala D-ala ligase [Bacillus cereus G9241], gi\|47554631\|gb\|EAL12986.1...	4.0E-62	[1..304]	[1..304]
DDLA_BACCR - D-alanine--D-alanine ligase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305...	1.0E-60	[4..304]	[1..301]
gi\|114590613 - gi\|114590613\|ref\|XP_516898.2\| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pan trogl...	4.0E-58	[5..301]	[195..500]
gi\|109043037 - gi\|109043037\|ref\|XP_001096717.1\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alp...	4.0E-58	[5..301]	[136..441]
tr\|I7C1A7\|I7C1A7... - D-alanine--D-alanine ligase OS=Pseudomonas putida (strain DOT-T1E) GN=ddl PE=3 SV=1 gi\|148513648, gi... - gi\|82738696\|ref\|ZP_00901523.1\| D-alanine--D-alanine ligase [Pseudomonas putida F1], gi\|82714262\|gb\|E...	5.0E-58	[2..292]	[19..310]
DDL_PSEE4 - D-alanine--D-alanine ligase OS=Pseudomonas entomophila (strain L48) GN=ddl PE=3 SV=1 gi\|95112438 - gi\|95112438\|emb\|CAK17165.1\| D-alanine-D-alanine ligase B [Pseudomonas]	6.0E-58	[2..296]	[19..314]

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Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGVIMGGV SSEKQVSIMT GNEMIANLDK NKYEIVPITL NEKMDLIEKA KDIDFALLAL  60
   61 HGKYGEDGTV QGTLESLGIP YSGSNMLSSG ICMDKNISKK ILRYEGIETP DWIELTKMED 120
  121 LNFDELDKLG FPLVVKPNSG GSSVGVKIVY DKDELISMLE TVFEWDSEVV IEKYIKGEEI 180
  181 TCSIFDGKQL PIISIRHAAE FFDYNAKYDD ASTIEEVIEL PAELKERVNK ASLACYKALK 240
  241 CSVYARVDMM VKDGIPYVME VNTLPGMTQA SLLPKSADAA GIHYSKLLDM IIETSLRVRK 300
  301 EEGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1iovA
Description:	COMPLEX OF D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHONATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.87139587563481	bayes_pls_golite062009
D-alanine-D-alanine ligase activity	1.88295354007688	bayes_pls_golite062009
ligase activity	1.70071261805297	bayes_pls_golite062009
acid-amino acid ligase activity	1.43012336035246	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.463643664297841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: