YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257173, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257173, gi|....

Description	E-value	Query Range	Subject Range
gi\|47938724, gi\|... - gi\|47938724\|gb\|AAH72247.1\| MGC82338 protein [Xenopus laevis], gi\|148232581\|ref\|NP_001085152.1\| hypot...	2.0E-85	[2..295]	[31..324]
gi\|28277949, gi\|... - gi\|41055014\|ref\|NP_957509.1\| 3-hydroxy-3-methylglutaryl CoA lyase [Danio rerio], gi\|28277949\|gb\|AAH4...	1.0E-84	[3..295]	[44..336]
gi\|47219546 - gi\|47219546\|emb\|CAG09900.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-84	[2..295]	[40..333]
HMGCL_BOVIN - Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2	6.0E-84	[2..295]	[28..321]
gi\|83754898, gi\|... - gi\|83754901\|pdb\|2CW6\|F Chain F, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis An...	6.0E-83	[2..295]	[1..294]
HMGCL_MACFA - Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1	7.0E-83	[2..295]	[28..321]
gi\|19526275 - gi\|19526275\|gb\|AAL89669.1\|AF411956_10 hydroxymethylglutaryl-CoA lyase [Takifugu rubripes]	1.0E-82	[7..295]	[33..321]
gi\|115749044, gi... - gi\|115954272\|ref\|XP_001177727.1\| PREDICTED: similar to MGC82338 protein [Strongylocentrotus purpurat...	2.0E-82	[3..295]	[17..309]
gi\|114554642 - gi\|114554642\|ref\|XP_001166216.1\| PREDICTED: similar to 3-hydroxymethyl-3-methylglutaryl-Coenzyme A l...	2.0E-82	[2..295]	[3..296]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPNFAVIK EVGPRDGLQN EKKIVGTKDK VKWIQLLTEA GLSYVEVSSF VHPKWVPALA  60
   61 DANDVFSELK RDPNVTYAAL VPNQNGLERA FLQNVDEVNV FLSASESHNK SNINKSIKEA 120
  121 LVVIEDITKQ ALFEGKKVRG YVSTVFGCPY EGDISAIAVD ELCDQLFSYG IYEVSLGDTI 180
  181 GVANPLQVER VLEHLLKKYD ASQFAMHFHN TYGMALANVV KSLEYGITTF DSSCGGLGGC 240
  241 PYAPGASGNV ATDDLVHMLH KLGVQTNIDE EKLLRASQFI QSKLNIQLPS HVYRALQHKT 300
  301 ISR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1ydoA
Description:	Crystal Structure of the Bacillis subtilis HMG-CoA Lyase, Northeast Structural Genomics Target SR181.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits