YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262518, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262518, gi|....

Description	E-value	Query Range	Subject Range
gi\|52142973, gi\|... - gi\|52142973\|ref\|YP_083856.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51976442...	2.0E-74	[1..243]	[1..243]
gi\|75762722, gi\|... - gi\|75762722\|ref\|ZP_00742556.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se... gi\|218544131, gi... - gi\|218898614\|ref\|YP_002447025.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|228854586, gi... - gi\|228905041\|ref\|ZP_04069080.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus...	2.0E-71	[1..243]	[1..247]
gi\|163863244, gi... - gi\|89206486\|ref\|ZP_01185044.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill...	1.0E-70	[1..243]	[2..248]
gi\|170708364, gi... - gi\|170708364\|ref\|ZP_02898808.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|170667783, gi... - gi\|170688277\|ref\|ZP_02879487.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|190566954, gi... - gi\|190566954\|ref\|ZP_03019870.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|177653146, gi... - gi\|177653146\|ref\|ZP_02935433.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|196034365, gi... - gi\|196034365\|ref\|ZP_03101774.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ... gi\|164712794, gi... - gi\|165871497\|ref\|ZP_02216144.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167510370, gi... - gi\|167641663\|ref\|ZP_02399908.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167635556, gi... - gi\|167635556\|ref\|ZP_02393868.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|227817295, gi... - gi\|227817295\|ref\|YP_002817304.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|228842569, gi... - gi\|228917151\|ref\|ZP_04080709.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228929560, gi... - gi\|228929560\|ref\|ZP_04092579.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228659379, gi... - gi\|229124077\|ref\|ZP_04253269.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201], gi\|22... gi\|229264381, gi... - gi\|229599973\|ref\|YP_002868793.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|254686997 - gi\|254686997\|ref\|ZP_05150855.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|65321879, gi\|... - gi\|65321879\|ref\|ZP_00394838.1\| COG1876: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.... gi\|254724560 - gi\|254724560\|ref\|ZP_05186343.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254736617 - gi\|254736617\|ref\|ZP_05194323.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254741655 - gi\|254741655\|ref\|ZP_05199342.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254754747 - gi\|254754747\|ref\|ZP_05206782.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254757579 - gi\|254757579\|ref\|ZP_05209606.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49181332, gi\|... - gi\|49187405\|ref\|YP_030657.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|47530050, gi\|... - gi\|47530050\|ref\|YP_021399.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|30264580, gi\|... - gi\|30264580\|ref\|NP_846957.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ...	2.0E-65	[1..241]	[1..255]
gi\|49478675, gi\|... - gi\|49478675\|ref\|YP_038565.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	6.0E-65	[1..241]	[1..255]
gi\|228960778, gi... - gi\|228960778\|ref\|ZP_04122416.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228954782, gi... - gi\|228954782\|ref\|ZP_04116803.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|229129797, gi... - gi\|229129797\|ref\|ZP_04258764.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4], gi\|... gi\|229111975, gi... - gi\|229111975\|ref\|ZP_04241519.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15], gi\|2... gi\|228711176, gi... - gi\|229072017\|ref\|ZP_04205227.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185], gi\|228... gi\|30022592, gi\|... - gi\|30022592\|ref\|NP_834223.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|229048218, gi... - gi\|229048218\|ref\|ZP_04193787.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676], gi\|2287... gi\|229192711, gi... - gi\|229192711\|ref\|ZP_04319670.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876], gi... gi\|229180778, gi... - gi\|229180778\|ref\|ZP_04308116.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W], gi\|22... gi\|229152706, gi... - gi\|229152706\|ref\|ZP_04280893.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550], gi\|2286... gi\|228636459, gi... - gi\|229147071\|ref\|ZP_04275431.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24], gi\|... gi\|206969981, gi... - gi\|206969981\|ref\|ZP_03230935.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ... gi\|218158864, gi... - gi\|218230907\|ref\|YP_002369309.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus...	6.0E-65	[1..241]	[1..255]
gi\|42739616, gi\|... - gi\|42783687\|ref\|NP_980934.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	8.0E-65	[1..241]	[1..255]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKLVGIFT CMIVILGIFI VYTNQSIGKE PRKTNYETRE NSINKEKNST SNNIASSFAS  60
   61 VQAVVNKEYG LPEDYKPEDL VVPNVPFSFS GTLEKSYLRK EAAEALERLF DLANKEGIQL 120
  121 NAVSGFRSYD YQKKLYANNV KRKGQEHTDR FSAKPGHSEH QTGLTMDVSS KSANNELELT 180
  181 FANTKEGKWL KENAHRAGFI IRYPKGKESI TGYAYEPWHI RYVGDIAESI YKKKLTLEEY 240
  241 MNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: