YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262508, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262508, gi|....

Description	E-value	Query Range	Subject Range
gi\|110611284 - gi\|110611284\|gb\|ABG77991.1\| 1-pyrroline-5-carboxylate dehydrogenase 2 [Glossina morsitans morsitans]	0.0	[2..487]	[38..522]
gi\|20372798 - gi\|20372798\|emb\|CAD30313.1\| aldehyde dehydrogenase [Geobacillus stearothermophilus]	0.0	[10..483]	[21..491]
gi\|45523555, gi\|... - gi\|67925207\|ref\|ZP_00518574.1\| Aldehyde dehydrogenase (NAD+) [Crocosphaera watsonii WH 8501], gi\|678...	0.0	[8..485]	[15..490]
AL1A1_SHEEP - Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2	0.0	[1..487]	[13..498]
AL1A1_BOVIN - Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3	0.0	[1..487]	[13..498]
gi\|60653829, gi\|... - gi\|60653831\|gb\|AAX29608.1\| aldehyde dehydrogenase 1 family member A1 [synthetic construct], gi\|60653...	0.0	[1..487]	[13..498]
gi\|123979532, gi... - gi\|61362025\|gb\|AAX42143.1\| aldehyde dehydrogenase 1 family member A1 [synthetic construct], gi\|61362... ALDH1A1 - aldehyde dehydrogenase 1 family, member A1 gi\|114625008, gi... - gi\|114625014\|ref\|XP_001143446.1\| PREDICTED: aldehyde dehydrogenase 1A1 isoform 9 [Pan troglodytes], ...	0.0	[1..487]	[13..498]
gi\|88179418, gi\|... - gi\|88179418\|gb\|EAQ86886.1\| hypothetical protein CHGG_08139 [Chaetomium globosum CBS 148.51], gi\|1161...	0.0	[2..485]	[13..492]
gi\|52785994, gi\|... - gi\|52785994\|ref\|YP_091823.1\| DhaS [Bacillus licheniformis ATCC 14580], gi\|52348496\|gb\|AAU41130.1\| Dh...	0.0	[10..483]	[24..494]

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Predicted Domain #1

Region A:
Residues: [1-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQTAQIVK NYIGGEWVES ISTKMEAVYN PATGEVIAQV PLSTKVDVEQ AVLAANEAFK  60
   61 SWSKTAVPRR ARILFKYQQL LVDNWEELAK LITIENGKSY NEAYGEVLRG IECVEFAAGA 120
  121 PTLMMGKQLP DIATGIESGM YRYPIGVIGG ITPFNFPMMV PCWMFPLAIA CGNTFVLKPS 180
  181 ERTPLLAARL AELAEEAGLP KGVLNIVNGA HDVVNGLLEH KLVKAISFVG SQPVAEYVYK 240
  241 KGTENLKRVQ ALAGAKNHSI VLNDANLELA TKQIISAAFG SAGERCMAAS VVTVEEEIAD 300
  301 QLVERLVAEA NKIVIGNGLD EDVFLGPVIR DNHKERTIGY IDSGVEQGAT LVRDGREDTA 360
  361 VKGAGYFVGP TIFDHVTKEM KIWQDEIFAP VLSIVRVKSL DEAIEIANES RFANGACIYT 420
  421 DSGASVRQFR ETIESGMLGV NVGVPAPMAF FPFSGWKDSF YGDLHANGTD GVEFYTRKKM 480
  481 LTSRWEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	154.0
Match:	1t90A
Description:	Crystal structure of methylmalonate semialdehyde dehydrogenase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits