YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65319756, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65319756, gi|....

Description	E-value	Query Range	Subject Range
gi\|221240100, gi... - gi\|222096042\|ref\|YP_002530099.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus cer... gi\|217066191, gi... - gi\|217959955\|ref\|YP_002338511.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ce... gi\|206973766, gi... - gi\|206973766\|ref\|ZP_03234684.1\| putative PTS system, cellobiose-specific IIC component [Bacillus cer... gi\|42781558, gi\|... - gi\|42781558\|ref\|NP_978805.1\| PTS system, cellobiose-specific IIC component, putative [Bacillus cereu...	8.0E-68	[1..428]	[1..427]
gi\|29896076, gi\|... - gi\|30020525\|ref\|NP_832156.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus cereus ... gi\|228638438, gi... - gi\|229145032\|ref\|ZP_04273426.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus BDRD-... gi\|229127831, gi... - gi\|229127831\|ref\|ZP_04256817.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus BDRD-... gi\|218159738, gi... - gi\|218231781\|ref\|YP_002367134.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ce...	2.0E-67	[1..428]	[1..427]
gi\|89207629, gi\|... - gi\|89207629\|ref\|ZP_01186166.1\| PTS lactose/cellobiose IIC component [Bacillus weihenstephanensis KBA...	5.0E-67	[1..428]	[1..427]
gi\|47570066, gi\|... - gi\|47570066\|ref\|ZP_00240726.1\| PTS system, IIC component [Bacillus cereus G9241], gi\|47553268\|gb\|EAL...	6.0E-67	[1..428]	[1..427]
gi\|49330853, gi\|... - gi\|49479297\|ref\|YP_036580.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus thuring... gi\|228825829, gi... - gi\|228933757\|ref\|ZP_04096603.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensi... gi\|228927514, gi... - gi\|228927514\|ref\|ZP_04090567.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensi... gi\|228844588, gi... - gi\|228915054\|ref\|ZP_04078653.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensi... gi\|218539955, gi... - gi\|218903596\|ref\|YP_002451430.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ce... gi\|227005466, gi... - gi\|227814728\|ref\|YP_002814737.1\| putative PTS system, cellobiose-specific IIC component [Bacillus an... gi\|196029202, gi... - gi\|196039943\|ref\|ZP_03107246.1\| putative PTS system, cellobiose-specific IIC component [Bacillus cer... gi\|254743330 - gi\|254743330\|ref\|ZP_05201015.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus anth... gi\|195993511, gi... - gi\|196033831\|ref\|ZP_03101242.1\| putative PTS system, cellobiose-specific IIC component [Bacillus cer... gi\|228661349, gi... - gi\|229122006\|ref\|ZP_04251222.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus 95/82... gi\|190563205, gi... - gi\|190565178\|ref\|ZP_03018098.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ant... gi\|228691878, gi... - gi\|229091437\|ref\|ZP_04222648.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus Rock3... gi\|167632669, gi... - gi\|167632669\|ref\|ZP_02390996.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ant... gi\|228813577, gi... - gi\|228946064\|ref\|ZP_04108400.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensi... gi\|164715593, gi... - gi\|165868867\|ref\|ZP_02213527.1\| putative PTS system, cellobiose-specific IIC component [Bacillus ant... gi\|254751800 - gi\|254751800\|ref\|ZP_05203837.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus anth...	2.0E-66	[1..428]	[1..427]
gi\|51976496, gi\|... - gi\|52143027\|ref\|YP_083803.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus cereus ...	6.0E-66	[1..428]	[1..427]
gi\|75762133, gi\|... - gi\|75762133\|ref\|ZP_00742034.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus thuri... gi\|228858558, gi... - gi\|228901042\|ref\|ZP_04065251.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensi...	2.0E-65	[1..428]	[1..427]
gi\|56911673, gi\|... - gi\|56965429\|ref\|YP_177161.1\| PTS system, diacetylchitobiose-specific enzyme II, C component [Bacillu...	5.0E-64	[1..423]	[1..422]
gi\|152024319, gi... - gi\|89201968\|ref\|ZP_01180700.1\| PTS lactose/cellobiose IIC component [Bacillus cereus subsp. cytotoxi...	2.0E-63	[1..426]	[1..425]
PTLCB_STAHJ - PTS system lactose-specific EIICB component OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lacE...	5.0E-60	[1..423]	[1..426]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFVTFLDK NLSGPMARLS EQRHLQAIRD GVISALPFII VGSFFLIVAF PPLPKDSFIS  60
   61 VWALKNQTSI LIPYRLTMFI MSLYIAFGIG YNLAKSYKLD ALSGAQLAVC SLLLTLTPEL 120
  121 IDKKGFMLPM TNLGGHGLFV T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSILSVEI LRFCKKNNVT IKMPEQVPPS VSRSFEALIP AAFVIIIIMS LITVVFKVDV  60
   61 HYVVDKLAAP LVKAGDSYFG VIIPVFLITF FWSFGIHGVS VVGTVARPLW DVYLGKNGEA 120
  121 VASGASQF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [270-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFIAPEPFYQ WFIWIGGSGA TLGLVLAMIV FGRSKYSKAL SRTCIVPGIF NINEPVIFGL  60
   61 PIVLNPILII PFVITPLVTA TIAYAATAMG FVTPTHIMPP WTLPAPIGAY LATGGDWRAI 120
  121 VLVLINIAIS FLIYLPFFKM YDKNMLEIEK NGEGESVNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits