YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49185169, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49185169, gi|....

Description	E-value	Query Range	Subject Range
gi\|49329163, gi\|... - gi\|49477607\|ref\|YP_036425.1\| S-layer protein, missing N-terminal [Bacillus thuringiensis serovar kon...	281.0	[0..52]	[383..1]
gi\|42736069, gi\|... - gi\|42780151\|ref\|NP_977398.1\| S-layer-like domain-containing protein [Bacillus cereus ATCC 10987], gi...	279.0	[0..1]	[382..1]
gi\|47558321, gi\|... - gi\|47564948\|ref\|ZP_00235992.1\| internalin [Bacillus cereus G9241], gi\|47558321\|gb\|EAL16645.1\| intern...	264.0	[0..1]	[382..1]
SLAP_BACLI - S-layer protein OS=Bacillus licheniformis PE=3 SV=1 gi\|206746096, gi... - gi\|206975634\|ref\|ZP_03236546.1\| S-layer protein EA1 [Bacillus cereus H3081.97], gi\|206746096\|gb\|EDZ5...	233.0	[0..3]	[370..7]
gi\|53764806, gi\|... - gi\|75910426\|ref\|YP_324722.1\| hypothetical protein Ava_4228 [Anabaena variabilis ATCC 29413], gi\|7570...	230.0	[0..16]	[380..291]
gi\|51977903, gi\|... - gi\|52144434\|ref\|YP_082394.1\| S-layer protein, EA1 protein [Bacillus cereus E33L], gi\|51977903\|gb\|AAU...	230.0	[0..3]	[370..7]
gi\|17229109, gi\|... - gi\|17229109\|ref\|NP_485657.1\| hypothetical protein all1617 [Nostoc sp. PCC 7120], gi\|17135437\|dbj\|BAB... gi\|25530613 - pir\|\|AC2008 hypothetical protein all1617 [imported] - Nostoc sp. (strain PCC 7120)	228.0	[0..16]	[380..292]
gi\|152974538, gi... - gi\|89200426\|ref\|ZP_01179179.1\| S-layer-like region [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	224.0	[0..3]	[370..7]
gi\|228846152, gi... - gi\|228913565\|ref\|ZP_04077194.1\| hypothetical protein bthur0012_8050 [Bacillus thuringiensis serovar ... gi\|49177793, gi\|... - gi\|49183866\|ref\|YP_027118.1\| S-layer protein EA1 [Bacillus anthracis str. Sterne], gi\|49177793\|gb\|AA... gi\|228833592, gi... - gi\|228926054\|ref\|ZP_04089133.1\| hypothetical protein bthur0010_7770 [Bacillus thuringiensis serovar ... gi\|47501321, gi\|... - gi\|47526173\|ref\|YP_017522.1\| s-layer protein ea1 [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501... gi\|229266909, gi... - gi\|229602501\|ref\|YP_002865459.1\| S-layer protein EA1 [Bacillus anthracis str. A0248], gi\|229266909\|g... gi\|30261021, gi\|... - gi\|30261021\|ref\|NP_843398.1\| S-layer protein EA1 [Bacillus anthracis str. Ames], gi\|30254635\|gb\|AAP2... gi\|254682919 - gi\|254682919\|ref\|ZP_05146780.1\| S-layer protein EA1 [Bacillus anthracis str. CNEVA-9066] gi\|165871913, gi... - gi\|165871913\|ref\|ZP_02216555.1\| S-layer protein EA1 [Bacillus anthracis str. A0488], gi\|164712344\|gb... gi\|254725706 - gi\|254725706\|ref\|ZP_05187488.1\| S-layer protein EA1 [Bacillus anthracis str. A1055] gi\|254734332 - gi\|254734332\|ref\|ZP_05192045.1\| S-layer protein EA1 [Bacillus anthracis str. Western North America U... gi\|167513168, gi... - gi\|167639038\|ref\|ZP_02397312.1\| S-layer protein EA1 [Bacillus anthracis str. A0193], gi\|167513168\|gb... gi\|254740020 - gi\|254740020\|ref\|ZP_05197712.1\| S-layer protein EA1 [Bacillus anthracis str. Kruger B] gi\|167635874, gi... - gi\|167635874\|ref\|ZP_02394182.1\| S-layer protein EA1 [Bacillus anthracis str. A0442], gi\|167528691\|gb... gi\|254753359 - gi\|254753359\|ref\|ZP_05205395.1\| S-layer protein EA1 [Bacillus anthracis str. Vollum] gi\|254758458 - gi\|254758458\|ref\|ZP_05210485.1\| S-layer protein EA1 [Bacillus anthracis str. Australia 94] gi\|65318302, gi\|... - gi\|65318302\|ref\|ZP_00391261.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [... gi\|170708271, gi... - gi\|170708271\|ref\|ZP_02898716.1\| S-layer protein EA1 [Bacillus anthracis str. A0389], gi\|170126792\|gb... SLAP2_BACAN - S-layer protein EA1 OS=Bacillus anthracis GN=eag PE=3 SV=1 gi\|170668372, gi... - gi\|170687559\|ref\|ZP_02878775.1\| S-layer protein EA1 [Bacillus anthracis str. A0465], gi\|170668372\|gb... gi\|190562097, gi... - gi\|190566545\|ref\|ZP_03019462.1\| S-layer protein EA1 [Bacillus anthracis Tsiankovskii-I], gi\|19056209... gi\|177653863, gi... - gi\|177653863\|ref\|ZP_02935935.1\| S-layer protein EA1 [Bacillus anthracis str. A0174], gi\|172081091\|gb... gi\|227816247, gi... - gi\|227816247\|ref\|YP_002816256.1\| S-layer protein EA1 [Bacillus anthracis str. CDC 684], gi\|227005906...	224.0	[0..3]	[370..7]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKQIILAG AVLATSTFTS LTNAQAETGF RDVPSDHWSY NAIMGLKEKN IVAGYGNGMF  60
   61 GFGDNITRGQ VARLIYAYLK PADEHNAPNP FTDVKGHMFE KEILSLSKAG IMNGFGDGKF 120
  121 GPDNVLTREQ LAVVLTKAFN F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.752	N/A	N/A	a.24.3	Cytochromes
View	Download	0.407	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.396	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.350	N/A	N/A	a.39.1	EF-hand
View	Download	0.320	N/A	N/A	a.118.9	ENTH/VHS domain

Predicted Domain #2

Region A:
Residues: [142-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KATSTTTFKD VDKNYWATNA ISALQENKIA AGTGDNLFEP KNIVTREQYA QFLYNAMNTV  60
   61 EVKPELTPFG IPSSMITNDF YYNSNNWKNA SPVLKKSVSN EAQNLITKIN KKYN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.610	N/A	N/A	a.1.1	Globin-like
View	Download	0.594	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5
View	Download	0.465	N/A	N/A	a.1.1	Globin-like
View	Download	0.405	N/A	N/A	a.186.1	Description not found.
View	Download	0.385	N/A	N/A	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.319	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.318	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.243	N/A	N/A	a.1.1	Globin-like
View	Download	0.219	N/A	N/A	a.36.1	Signal peptide-binding domain

Predicted Domain #3

Region A:
Residues: [256-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDYKYESASV SSMGLPESVQ LRTSNPNLGR VYDLGQGQFF VQGENEHDFY IMFIIDNATV  60
   61 ELAKSWITLI NSDLNLDKEI NDVIAMPSQK ARGRDYHTYL DKGKYQIELG TSPQTKGYDS 120
  121 LFIGIKRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.762	b.33.1	ISP domain
View	Download	0.672	d.224.1	SufE-like
View	Download	0.666	b.33.1	ISP domain
View	Download	0.665	d.198.1	Type III secretory system chaperone
View	Download	0.653	d.58.10	Acylphosphatase-like
View	Download	0.556	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View	Download	0.529	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View	Download	0.502	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits