YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262231, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262231, gi|....

Description	E-value	Query Range	Subject Range
gi\|47087189, gi\|... - gi\|47087189\|ref\|NP_998737.1\| solute carrier family 6 (neurotransmitter transporter, serotonin), memb...	0.0	[3..441]	[118..595]
SC6A3_BOVIN - Sodium-dependent dopamine transporter OS=Bos taurus GN=SLC6A3 PE=2 SV=1	0.0	[2..444]	[58..538]
gi\|220943542 - gi\|220943542\|gb\|ACL84314.1\| ine-PB [synthetic construct] ine-PF, ine-PE, ... - The gene inebriated is referred to in FlyBase by the symbol Dmel\ine (CG15444, FBgn0011603). It is a...	0.0	[1..443]	[333..816]
gi\|91087161 - gi\|91087161\|ref\|XP_975356.1\| PREDICTED: similar to high-affinity octopamine transporter protein [Tri...	0.0	[4..443]	[176..666]
SC6A4_MACMU - Sodium-dependent serotonin transporter OS=Macaca mulatta GN=SLC6A4 PE=2 SV=1	0.0	[3..441]	[78..555]
gi\|126352538, gi... - gi\|126352538\|ref\|NP_001075293.1\| serotonin transporter [Equus caballus], gi\|110225193\|dbj\|BAE97586.1...	0.0	[3..441]	[78..555]
SLC6A4 - solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	0.0	[3..441]	[78..555]

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Predicted Domain #1

Region A:
Residues: [1-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTEQWTSK LGFIMAAAGS AIGLGAIWKF PYIAGKSGGG AFFLIFILFT VLIGLPLLIA  60
   61 EFMIGRSTQK QAVDAFKSIA PNTGWHWIGR LGVGTCFILL SFYSVVGGWV FIYLFRGVTG 120
  121 QLITPGQNYG ALFTETIGNP AWAILGHFAF MFITIWVVSK GVQNGIEKAS KYMLPALFVL 180
  181 FVALIVRSLT LDNAMQGVKF FLQPDFSKIT SESILFAMGQ SFFAISIGIS IMVTYSSYLN 240
  241 KKESLPKSAI TIVGLNLFVS LFAGLAIFPA VFSLGMEPTE GPGLLFIVLP SVFSQIPFGG 300
  301 FFLTVFLALF TFATLTSAFS LLETVVSALA NGEQERRTKL SWMIGFCIFL VGIPSALSFG 360
  361 VWSDITIFGK NIFDAVDFLS SNILMPLGAL FISIFVSFKM EKKVLEADFF VGGNYGKKVF 420
  421 TCWAFLLRFV APLAIIIVFL NVIGVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits