YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49185066, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49185066, gi|....

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	2.0E-64	[26..474]	[925..1385]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	5.0E-63	[26..431]	[492..906]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	6.0E-62	[21..473]	[472..935]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	1.0E-60	[15..466]	[579..1035]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	8.0E-60	[16..472]	[542..1013]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	9.0E-58	[26..474]	[607..1067]
gi\|85078865 - gi\|85078865\|ref\|XP_956243.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917298, gi\|... - gi\|32414999\|ref\|XP_327979.1\| hypothetical protein [Neurospora crassa], gi\|28917298\|gb\|EAA27007.1\| hy...	5.0E-57	[18..452]	[537..982]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	5.0E-57	[40..474]	[667..1113]
gi\|116199663, gi... - gi\|88179266\|gb\|EAQ86734.1\| hypothetical protein CHGG_07987 [Chaetomium globosum CBS 148.51], gi\|1161...	8.0E-57	[27..474]	[506..964]
gi\|57227159, gi\|... - gi\|58267538\|ref\|XP_570925.1\| phosphate transporter [Cryptococcus neoformans var. neoformans JEC21], ... gi\|50257736, gi\|... - gi\|50257736\|gb\|EAL20437.1\| hypothetical protein CNBE3580 [Cryptococcus neoformans var. neoformans B-...	4.0E-55	[4..474]	[470..952]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKNVVELH VDNNDTPKVK SSWVLPVALI LIVEIVLLLP SSLTMEAKWS LFGFCSAIIL  60
   61 WTTTTINSAY IALGSVLFLI ISGTAKQDLL FDSLASDVIW LMIGSFILGR ALQITGLAEK 120
  121 MTYFVVNRAR NISGLCWILT MIIQILAFFI PSTSGRAAVV LPVFQAICKE IGSRRIAKAL 180
  181 AILMPTVILV STSSTIIGAG SHLIALDMLN EFNNKNITFV EWLIWGLPFG IIMSFISCRV 240
  241 ILVLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [246-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKEEVKTKL QQKKVKFELS RNEKYTISIL IAMVAFWLTE WLHGLEIATV TIIGVFLLTL  60
   61 PKLGVMQWKE SLKGVSWNLI LFVGAAIALG KSLMESGAAQ WIMQNLFLVT ELINKQSIFI 120
  121 VLLVIVILSV TSHLYITSHT TRAVIFIPPL LYFASSLQLN EVAVLFLGIV GMNYCLTFPV 180
  181 SSKALLLFQE SDRETFQPQD LLKLSSYLSV IYIFVMVIFY YAYWQWVGLS L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits